BAC Information

Click to search

BAC

Clone NameMSMg01-294F18
Chromosome10 (Build37)
Map Location 56,630,157 - 56,630,472
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
Downstream geneLOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F18.T7 (MSMg01no294_f18.b1)MSMg01-294F18.TJ (MSMg01no294_f18.g1)
ACCAG422553AG422554
length717719
length of high quality
(start - end)
321 (53 - 373)---
definitionCHROMAT_FILE: MSMg01no294_f18.b1 PHD_FILE: MSMg01no294_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:01 2005CHROMAT_FILE: MSMg01no294_f18.g1 PHD_FILE: MSMg01no294_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTTTTTTGTTACACGTAAGGTGCATTTACAAAAATTG
ATTGTCTTCATATGAACTTGCAAACGAACTATTGAGAATGCAAAATTAAA
ACTGATCATATTCAAAGCAAGATTAAACAGAAATACTTAGCAATAACTTT
CAAAAGAATTTTAAAAAGCAGCAACATGACAATAAGAGACATAGAATAAG
ATTTGAATTAAAGAAAGGCTTTTTGTGAATAGGATAATTTCTAAAATCAT
TGGTTAGTAGAATGCTATCCAAGCAAAATCTCGTAGCACTCTATTTCCAC
TGAATAAATGAATATTCTTTTTTGTACTCACCACCGCCCACTTTGACTAA
GATAGCCTTAACAAGAGATTGATTACCAGAGAAAAAGAACAGCATTTAGT
TAATGTAATGCGGGACGCCCCACTCGCCAGCAAGTGAGACGCCATAGCAG
GATCCTTCTGCAACAAGTTTATTGGGAGAGCATGGACTGTGTAGGCGAAA
GACCCCAAGCCCCAGAAATGGCGCTGCTTATATAGGCCTAGGAGTGATGT
GTCCATACCTGATTGGTTATGCTACCAGCACCTCATTAATATGCGTCGGG
CCAAGCAGTGACTCGGCAAAAAACTCTTATGCACATGAGCACATTGGTTT
GTTACCCAAATTCATGG
NNTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATACAAGAAACATT
AAATATAAATGATAATTTTATTTTTTTTGCCCCTGTAGCTTTTTCTTAGA
GCGGAGAATAAGGGGAAATAATCTGACCTTGTTTATTTTAAGTTTTCCAC
TTTAATTTGTATTAAGAACAGACCATGGTAGGTAAAAAGTGAAATCAAAG
ATGTCAGTTTTTTGAAGGTAGGATCATTGCCAAGTTGGATAAGAGGATTA
TTTGTAGAAAAGAAAAAGAAACAAGGATGATTATTAAGTGAAATTAACTG
GCTGAATAATGGATTTAATATTTTTTTTGACCACCCGCCGAACTTGAAGC
TTCAGAGGTTGATCTTTATTGCTTTGCAGAGAGGTTATTGTGCACATGAT
GGGAGAGGGATGGGATAGAAACTAGAAAGGATGTGAACACACACATATCT
ATTTTGTAGGGTCTATTGACCATACATATGACCTAAGTTTGCGACAAAAA
ATGAGCAGGTGATGAAGCAGAGCATAAATGTGATTGTTTGCAAATTAGAT
CCTTGATCAAATAAGAGAAGTGAGAAAGGCTGTGTGGTAACAGGAAGGAA
AATTATAAAGGAAGTCGAGGAGATACTTTTTTGTGATAGAAAAGAAAATT
GTCACCATCTTGAAGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f18.b1 MSMg01no294_f18.b1 CHROMAT_FILE:
MSMg01no294_f18.b1 PHD_FILE: MSMg01no294_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:01 2005
         (321 letters)



>mm_chr10_56629793_56630513
          Length = 721

 Score =  592 bits (306), Expect = e-173
 Identities = 313/316 (99%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttttttgttacacgtaaggtgcatttacaaaaattgattgtcttcatatgaa 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattcctttttttgttacacgcaaggtgcatttacaaaaattgattgtcttcatatgaa 621

                                                                       
Query: 65  cttgcaaacgaactattgagaatgcaaaattaaaac--tgatcatattcaaagcaagatt 122
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 620 cttgcaaacgaactattgagaatgcaaaattaaaacattgatcatattcaaagcaagatt 561

                                                                       
Query: 123 aaacagaaatacttagcaataactttcaaaagaattttaaaaagcagcaacatgacaata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaacagaaatacttagcaataactttcaaaagaattttaaaaagcagcaacatgacaata 501

                                                                       
Query: 183 agagacatagaataagatttgaattaaagaaaggctttttgtgaataggataatttctaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agagacatagaataagatttgaattaaagaaaggctttttgtgaataggataatttctaa 441

                                                                       
Query: 243 aatcattggttagtagaatgctatccaagcaaaatctcgtagcactctatttccactgaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatcattggttagtagaatgctatccaagcaaaatctcgtagcactctatttccactgaa 381

                           
Query: 303 taaatgaatattcttt 318
           ||||||||||||||||
Sbjct: 380 taaatgaatattcttt 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)