BAC Information

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BAC

Clone NameMSMg01-295F14
Chromosome10 (Build37)
Map Location 55,657,530 - 55,657,668
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295F14.T7 (MSMg01no295_f14.b1)MSMg01-295F14.TJ (MSMg01no295_f14.g1)
ACCAG423267AG423268
length768766
length of high quality
(start - end)
187 (128 - 314)144 (72 - 215)
definitionCHROMAT_FILE: MSMg01no295_f14.b1 PHD_FILE: MSMg01no295_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:15 2005CHROMAT_FILE: MSMg01no295_f14.g1 PHD_FILE: MSMg01no295_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TAATACCAATACTGTGGGAAGCCACATGTGACATTGCAGAGTGGCGCTGA
CTACTGCTGGCCACCATGCATAAGTTTGGACAAACAACCAATGTGTACAT
ATGCAGTAAAGTTTTTTGCAAAGACACTGCCTGGCCCATGCATGATAATG
AGGCTTTGAGAGTATAACCAATCAGATGTGATACATGCAAATGAGGTATG
ATAATGAGGCTCTGTGAGGTACAGAGAGAGAGAGTAGCCAATCAGATGAG
GAACATGCAAATGAGGCTTAGTGCATAACCAATCTGGTGTGAGACACGCC
TCTCTCTAGGTTANTTCCCNAGACCCACCCTCTGTGCACGGGGTCATCTT
CGCCTCTGTTTTCCCCCTCTCCAAATCAACAAATACACAGGGGTGGGGGG
GCAGCCTCGTTCTTGCTGGTCTAGTCTGTCGCACATCAATACAATACTCC
TCAAACTATTACACAAAATATATATAGAAGGTACTCCACCCAATTCAAAA
CCACAATTACTCTGTACCCTACTGGACACTCATTACCCTACCATTTATTC
AGAATGTCCTATCTCTTTCCTTTTATGCACCATCCATGCATACACGCTTC
TCACAATCTTTTGCCCATCTGTATCTCAGAACCTCTTTAACATGATCCTT
CCCTCCTTGCCTCTACTAACCATTCCTGCCCCAATATCCTTTGGCTCGCC
CCACATACTTTTCTATTC
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACCTGCAGGAGTAGGTTAGATTAGTTCT
TAGAATAAATGAGAATAATTTGACTTCTGAGAATGTGGTACTTATTATGG
TTTCAAGTGTTGATGTTTGGGAAGAAGACAGGCCTTATAGCTGACGTTGT
CTGAGGGGCTGACTCATGGTGCAGGCAAAGTGAGACATATTGTAAAAATT
AAGAAGCCAAGATAAGTCAGCCCCATGATGGCCAAATAAAATCCTTTGTC
TACTCTGCTGAGAAGACACTGGTTATTTTTGTTAAACTTGTCTTGTTTGA
TGCCTGACTTCAGTAATTTTCCCCCCCCCCCTCATGTTCATCCCTTACTT
AGCAGTCAACCCCCACCTCAAAGAAAAAAACAAAATTCTTATCGGGGCGG
TGCACCCCGCTGACCCTTTTTATGTGGGCTTTCCTCATTCCATAATTGCA
CGTATAATTCAAATATACAATCACTCTGTGGCTTCATTTCTTGTTGCACT
TCTCATGACAAGTAGGTTTTTATCTGATCGGGCTGTGGGTGGGTTAACCT
ATACCTCTTCACCTTTTCCCTCTCTTTTCGTCCTTTTCTTTCTCCTTCTA
TTCCCTTTTATTCTCCTTTTACTCCTTCCTTTTGTGTATCCATCTTTCCC
CCCTTTTATCCACCTTTATTCCCTCCTTAATTCCCCCTTTCCATTCCACT
TTCATTCCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_f14.g1 MSMg01no295_f14.g1 CHROMAT_FILE:
MSMg01no295_f14.g1 PHD_FILE: MSMg01no295_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:15 2005
         (144 letters)



>mm_chr10_55657327_55657870
          Length = 544

 Score =  253 bits (131), Expect = 3e-72
 Identities = 137/139 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctgcaggagtaggttagattagttcttagaataaatgagaataatttgacttctgagaat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 342 ctgcaggagtaggttagattagttcttagaataaatgagaataatttgacttctgaaaat 283

                                                                       
Query: 64  gtggtacttattatggtttcaagtgttgatgtttgggaagaagacaggccttatagctga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 gtggtacttattatggtttcaagtgttgatgtttgggaagaagacaggccttaaagctga 223

                              
Query: 124 cgttgtctgaggggctgac 142
           |||||||||||||||||||
Sbjct: 222 cgttgtctgaggggctgac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)