BAC Information

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BAC

Clone NameMSMg01-295L12
Chromosome10 (Build37)
Map Location 23,282,821 - 23,283,110
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040078, Slc2a12, Tbpl1, Tcf21, Eya4
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L12.T7 (MSMg01no295_l12.b1)MSMg01-295L12.TJ (MSMg01no295_l12.g1)
ACCAG423534AG423535
length742740
length of high quality
(start - end)
321 (42 - 362)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no295_l12.b1 PHD_FILE: MSMg01no295_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:44 2005CHROMAT_FILE: MSMg01no295_l12.g1 PHD_FILE: MSMg01no295_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTAAGGATAGGAATCCAATAGGAATCCGAGTAAAGGAACACAAGATTT
GTCCAAGTCAGAGTGAGAGCAGAGCCAGGGAGTCATACATTTCCGTAGAC
TCAGAACATGCTTTATATGCAGAAGGAAGGCAATGGAGTCCTAAGAAACA
CAGAGCAAGGCATCTCTCTCCTCCCTATTTGCGGTGCTTCCTGTTGTAGT
TGATTACCAGACCCAAAACAAATCTCTAAGAGCTGTTCATCTCCTACACT
GGGTCATGGAGCCTTCACAAGGTCAAGGGCCTCTCCTCTCATTGATGTCC
CACAAGGCCATTTTTTGCTACACCTCCGGCTGAAGCCTTGAGTCCCTCCT
TGTCTACTTTTTGGCCGCCGGTTTAAAAAAAGAGAACTCTAGGGGTGGTG
GGTGGTTCATATTGTTCCTCCTATGGGGCTGCAAACCCCTTCATTTCCCT
GGGTATTTTCTCTGGCTCCTCATTGGGGACCCTGTGCTCTGTCCTATGTA
TGACTGTGAGCCTCCTCTTCTGTATTAGGCAGGCACTGGCCGATTCTCTT
TGGATACCGTTATATTCGATTTTTGCCATCTAGCTTTTGCGTAGGGTAAT
GCCAGGACAGGCGACCATGAGTGGGAAGCTTACCGACTATCCAATCGACC
TATTCTTTTTCCTTTCCTTTCCTTCCTCCTTTTCTTTGCTTG
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATAGAAGAAGATAAGCTTTGAGAACTGGTG
AAACCATTTCAAATTCTCAATTGCACGATTTGTTTTTCAGACTGCTAATC
ATTTATTTCAACCTTAATGTAATTGGCTTACTTATTAGCTAATTTCACTT
TCACATATCTCCTGAGTAATGAAATGTCTCTCTCCTCTCCAACTTAACTT
CGACCCATCCATTAGCACATGAGTGTCTACCTGTCTATCCAATGAGTCTG
TGCCTGTGATACGTTTCCCTGACCAATTCTGTGGAACTTTCTAATTCCTA
TCTATGACCTGTTATATCCTCCCCCCTCCCTACAGTAAATAGAAATCTTG
AAAACTAAGTGCACACTATTGAGTGAACACATAGCCCAGAGAGTATGACA
AATGATACAATATTTGAAGGAATAACAAAATGTGGCCACTTTTGTTTGCT
TCTGGGATACTGGAATTTTGCCTAGATTTTAAATATTAGATCCATTATCC
ACATTGAAATATTTGCCACAGCATTGATTTTCTGAGAATGCACCGATACC
TCTAGGTTTGTGCTCAAGGCCGAAAAGATCTGCACTCTCTCTTTGTGAGC
ACCGAAGGACCTCTTGTGCATTGGCTGTGACCAATCAAGTTCTGCTTGAT
GCCCCATAATTACCCTCCGCGAGGCTAGTACCTTGTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l12.g1 MSMg01no295_l12.g1 CHROMAT_FILE:
MSMg01no295_l12.g1 PHD_FILE: MSMg01no295_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:44 2005
         (290 letters)



>mm_chr10_23282621_23283310
          Length = 690

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagaagaagataagctttgagaactggtgaaaccatttcaaattctcaattgcacgat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 490 aatagaagaagataagctttgagaactggtgaaaccatttcaaatcctcaattgcacgat 431

                                                                       
Query: 61  ttgtttttcagactgctaatcatttatttcaaccttaatgtaattggcttacttattagc 120
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 430 ttgttcttcagactgctaatcatttatttcaaccttaatgtcattggcttacttattagc 371

                                                                       
Query: 121 taatttcactttcacatatctcctgagtaatgaaatgtctctctcctctccaacttaact 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taatttcacttccacatatctcctgagtaatgaaatgtctctctcctctccaacttaact 311

                                                                       
Query: 181 tcgacccatccattagcacatgagtgtctacctgtctatccaatgagtctgtgcctgtga 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 310 tccacccatccattagcacatgagtgtctacctgtctatccaatgagtctgtgtctgtga 251

                                                             
Query: 241 tacgtttccctgaccaattctgtggaactttctaattcctatctatgacc 290
           |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 250 tacgtttccctgaccaattccgtggaactttctaattcctatctatgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)