BAC Information

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BAC

Clone NameMSMg01-296B09
Chromosome10 (Build37)
Map Location 23,066,479 - 23,066,767
singlet/doubletsinglet
Overlap geneEya4
Upstream geneRaet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296B09.T7 (MSMg01no296_b09.b1)MSMg01-296B09.TJ (MSMg01no296_b09.g1)
ACCAG423795AG423796
length738741
length of high quality
(start - end)
316 (45 - 360)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no296_b09.b1 PHD_FILE: MSMg01no296_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:11 2005CHROMAT_FILE: MSMg01no296_b09.g1 PHD_FILE: MSMg01no296_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTGGCTCACTCAAAATGGAGCTTTCATTTTTTTATTAAAATATA
AAACAAACAAATAAAAAACCTTTAATTACAAACTACTCACTTTTTATTTC
CTCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTACT
CTTCTTCCATTTTTTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAGC
TCATTTACATTTCCAATGCTATACCAAATGTCCCCCATACCCACCCACCC
CCACTCCCCTACCCATCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGT
ACTGGGGCATATTTTTTTTGCGCGCCCCCCGGGCCTCTCTTTCCAGTGAT
GGCCAACTAGGCCACCCCCTGATACAAAGAAGATAGAGTCGAGAGCTCTG
GGGTACTGGTTAGTTCATAATGTTGTTCCCATTTTTTTCAAGACAGGGTT
TTTCTGTGTAGCCCTGGCTGTCCTGGAACTGGCTCTGTAGACCAGGCAGG
CCTTGAACTCAGAGATCCACCTGCCTCTGCCTCCTGAGTACTGGAATTAA
AGGTGTGCGCCACCCCTGCCCAGCTAATTTACCATTCACCAGAAAGCATA
AGCTATTTTGAGCTCAAGGCTCCTCGAAGACTGGGTCTTGTTTCTCACGT
GCACAAAGCTTCATTCAATGGAACTAAAGAGCTATGTG
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCATGAAACCTGTGAGCTTCCGCT
GCATGGAAGCTAACAAAGCTTAAGTTTGTTATCTAAAAGTTAGAACGTGC
ATGTTTTCCAGGGCGCTAGCTTCTCTATCAACAGCCATGGGTGTTTCTAG
CATCTTACCCTTTCAAAGTTTCTACTCAATTTAACTTGGGTTCATCACAT
TTAATAAAGCCACATAAATGTATTTTTAGATATGGCATCAGCCACACAGA
GCTTGCATCAGTGACGAAAAACATGAAACTGGACACTGTATTTCCTATGG
GTGTGTAAAATTTATTTATCTCCACCCCTCCCCCCATAAATAAAAGAAAA
TTTAGAGATGGAGAATATGCTCCCTTTTTAACCCAAAGATATCTGCAAAT
CTTCAAAAATGAACTTCTCCACAAAGACTTTTTTTCCTTCCAGTTTCTAG
AAAATGCCCAAATGTCCATGTTTGTGTTTCTTAATGAGAACAAAACTGTT
CTTAAATAAATTTATTTTTTACACAAGTTGCAGTGTTTTGAAGTTTTTTT
ACTGGAATGTGCTAGCCAACGCTATGCTACTTATGAACACAGATACACAG
TTTTGTTTTGGAAATGAGAAAATTGTAATATTCAATGAAATAAACATAAA
CAAAAGGGGAAAAACTGAATAGCCCTTCCACTTATAACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_b09.g1 MSMg01no296_b09.g1 CHROMAT_FILE:
MSMg01no296_b09.g1 PHD_FILE: MSMg01no296_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:11 2005
         (289 letters)



>mm_chr10_23066279_23066967
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatgaaacctgtgagcttccgctgcatggaagctaacaaagcttaagtttgttatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatgaaacctgtgagcttccgctgcatggaagctaacaaagcttaagtttgttatcta 260

                                                                       
Query: 61  aaagttagaacgtgcatgttttccagggcgctagcttctctatcaacagccatgggtgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 aaagttagaacgtgcatgttttccagggcgctagcttctctatcaacagccatgggggtt 320

                                                                       
Query: 121 tctagcatcttaccctttcaaagtttctactcaatttaacttgggttcatcacatttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagcatcttaccctttcaaagtttctactcaatttaacttgggttcatcacatttaat 380

                                                                       
Query: 181 aaagccacataaatgtatttttagatatggcatcagccacacagagcttgcatcagtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagccacataaatgtatttttagatatggcatcagccacacagagcttgcatcagtgac 440

                                                            
Query: 241 gaaaaacatgaaactggacactgtatttcctatgggtgtgtaaaattta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaaacatgaaactggacactgtatttcctatgggtgtgtaaaattta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)