BAC Information

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BAC

Clone NameMSMg01-301G03
Chromosome10 (Build37)
Map Location 99,450,484 - 99,450,776
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G03.T7 (MSMg01no301_g03.b1)MSMg01-301G03.TJ (MSMg01no301_g03.g1)
ACCAG427602AG427603
length761727
length of high quality
(start - end)
290 (41 - 330)389 (68 - 456)
definitionCHROMAT_FILE: MSMg01no301_g03.b1 PHD_FILE: MSMg01no301_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:46 2005CHROMAT_FILE: MSMg01no301_g03.g1 PHD_FILE: MSMg01no301_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCCATAGATACAATGCTGGAGACTTTACAGTCTTCCTCTCTCAATCCCC
CTTAGTCCCTGCTTTACTCTCCCCAATCCTCTTCAGATTAAGAAACAACA
AAACCACACCAAGTGATTCACTGATAAAACATTTGAAATCCATAGGCTTA
CAGCTGCGATTTATTTTTTCTCCTCCTTGGGTTTTTTTTTTTAGGTTTAA
AGATAAATAGAGGCATTTCTGGGAAGATCCAATTAATGTTTGTCTCAAAT
AGCTGTCGACAAGTTAAAAAAAATCATTCAATTCATGGGAGCTCCTTTCT
GACTTGATTTTTGAGCTTCCCCACACCACTCTCCTTAAGTATAGCTATTT
TTGATCCTTTACTTCGCTGAAAAAATCTTTTGGTACCCCATAGTCTGGTT
TCTGTTATCATAGGTGAGCATGTATTAATCGCGCCTGTCTCTTTTCACAC
TGTCTCAGTGCTGATATCAGGAGTTATCCGCCTTATACCCCGATATTCCT
TGCTGTTAATCGCTTGTCGTCCCCCTTCACTACTGTCCCTGGTTTTCCAT
TTTTGTCATATGTCTCCACCTGACGGATTGTTTTTTCTACCCGTCGGGTT
CTTTGCTACCATTCTATTTCCTGTCCTTGATATTGTACTCTTCTTCGATT
CTTATTTACTCTTCGTTCCTATCCACTCTTTTCTTTCCCGGCTTCTACTC
TGTCACATTTA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCCTGAGGAATTTGTTCCATAGCGTCCTTTC
CTGCTCCTTCTTTGCTTGGGCAGTATTTGCTTTTGTTATCATAGTAAGTT
TAGCCTTCTAAAATAAATTGTAAGTGTTCCCTCCTGTTTCCTGAAAGGTG
TTGTGTCAAGCTGTGCTTGGTTCGTTCTTCTTTAAATGCCTGGAAGAATT
CTCTAGTGAAACCATCTGGGCCCAGGGATTTATTTGAGAGAAGTTTTTAA
ACTACCAGAGCAATTTCCATAACTGTTGTAGGGATATTCAAATGATTTAG
TTCATACTGTATTCAGTTTATGCATTTAAAGGAACATATGTTTTCAAATA
ATGTAGGCAAAATTGTGTGTAGGATCTCACTCTCTTTCTTTCTCCTTAAT
ATCAACAGGGACTATGACAATAAGACCCACTTTCATACCAAGTATTAACA
ACTGGCATATTTCTCTTTGCAATTTTTGCCAGTTTTCTTGCTTTTTTCTT
TTTGCTCTTTCCATATAAACTCTTGGCTTGTTTTTCTCCTGTTGCTCAAC
GTGTTTCCAATATCATTTTTTATTTCTACAGCTCTATTTATTTTCTTTGC
TGTTTTCTTCTGTGCTGCTACATTTTATATTTGACACTTTCCTCGATATT
ATAATACCATTCCCTCCTTGCATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g03.b1 MSMg01no301_g03.b1 CHROMAT_FILE:
MSMg01no301_g03.b1 PHD_FILE: MSMg01no301_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:46 2005
         (290 letters)



>mm_chr10_99450281_99450976
          Length = 696

 Score =  491 bits (254), Expect = e-143
 Identities = 282/294 (95%), Gaps = 8/294 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagccatagatacaatgctggagactttacagtcttcctctctcaatccccctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggaattcagccatagatacaatgctggagactttacagtcttcctctctcaatccccctt 437

                                                                       
Query: 64  agtccctgctttactctccccaatcctcttcagattaagaaacaacaaaaccacacc--- 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 436 agtccctgctttactctccccaatcctcttcagattaagaaacaacaaaaccacaccgag 377

                                                                       
Query: 121 -aa--gtgattcactgataaaacatttgaaatccataggcttacagctgcgatttatttt 177
            ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 376 taacggtgattcactgataaaacattcgaaatccataggcttacagctgcgatttatttt 317

                                                                       
Query: 178 ttctcctccttg-ggtttttttttttaggtttaaagataaatagaggcatttctgggaag 236
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttctcctccttgagg-ttttttttttaggtttaaagataaatagaggcatttctgggaag 258

                                                                 
Query: 237 atccaattaatgtttgtctcaaatagctgtcgacaagttaaaaaaaatcattca 290
           |||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 257 atccaattaatgtttgtctcaaattgttgtctacaagttaaaaaaaatcattca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 696
Length adjustment: 9
Effective length of query: 281
Effective length of database: 687
Effective search space:   193047
Effective search space used:   193047
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)