Query= MSMg01no301_l02.b1 MSMg01no301_l02.b1 CHROMAT_FILE:
MSMg01no301_l02.b1 PHD_FILE: MSMg01no301_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:09 2005
(702 letters)
>mm_chr10_3817351_3818452
Length = 1102
Score = 1326 bits (686), Expect = 0.0
Identities = 695/698 (99%)
Strand = Plus / Minus
Query: 5 gaattcatatctgcatccgtcccataatgtcctttctcctacatctaatgaagtttagtt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattcatatctgcatctgtcccataatgtcctttctcctacatctaatgaagtttagtt 843
Query: 65 gaatgctgatcaattccatctttatcttcaatactctttcctgaagatctctctcagtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaatgctgatcaattccatctttatcttcaatactctttcctgaagatctctctcagtca 783
Query: 125 actagaattttgacccccatctctctgatggaatatgtgtgcaagatctgccaagaatac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 actagaattttgacccccatctctctgatggaatatgtgtgcaagatctgccaagaatac 723
Query: 185 acgatccctgtgtcacagtgaatagactttctcctgttcccttactcttagagaccttgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 acgatccctgtgtcacagtgaatagactttctcctgttcccttactcttagagaccttgc 663
Query: 245 tcctgaccaccagggtacctattttctagaaagttaccacagatactctgctctatcata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcctgaccaccagggtacctattttctagaaagttaccacagatactctgctctatcata 603
Query: 305 gcaaaggaaatctggctccagctacaactccacagtataaaagtattccatagtacaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcaaaggaaatctggctccagctacaactccacagtataaaagtattccatagtacaaag 543
Query: 365 gctaaggatgccacttcttcttagatggagtgtcaatgaagccatcactccttgttccat 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctaaggatgccacatcttcttagatggagtgtcaatgaagccatcactccttgttccat 483
Query: 425 tccaacttctttggaggcaagtagctctgctgcagagacctacacaatatttcaaatgat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tccaacttctttggaggcaagtagctctgctgcagagacctacacaatatttcaaatgat 423
Query: 485 aaaatacagctattatgatgtgttatatgtgtcaaatcctataatgacagcttttatcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaaatacagctattatgatgtgttatatgtgtcaaatcctataatgacagcttttatcaa 363
Query: 545 ttatctttactattttttgcaaactcttgataaaatctggcataacacactcaatttaac 604
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 362 ttatctttactattttttgcaaactcttgataaaatatggcataacacactcaatttaac 303
Query: 605 tgataagaaaacacctgtaattcgactaaagtcaatgaatagcccacatgaacatgacct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgataagaaaacacctgtaattcgactaaagtcaatgaatagcccacatgaacatgacct 243
Query: 665 ttgacctcatccctctgcttctttccattatcctctcc 702
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgacctcatccctctgcttctttccattatcctctcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no301_l02.g1 MSMg01no301_l02.g1 CHROMAT_FILE:
MSMg01no301_l02.g1 PHD_FILE: MSMg01no301_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:09 2005
(514 letters)
>mm_chr10_3633045_3633958
Length = 914
Score = 806 bits (417), Expect = 0.0
Identities = 504/563 (89%), Gaps = 53/563 (9%)
Strand = Plus / Plus
Query: 1 tttgcttttttattttctgctcagataacaaggaa-gtgctttgccaaaaaccagaagaa 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 156 tttgcttttttattttctgctcagataacaaggaaagtgctttgccaaaaaccagaagaa 215
Query: 60 aactggaaacagctcgtgctttcctaatctcctctcagatgacttcattttactcagctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aactggaaacagctcgtgctttcctaatctcctctcagatgacttcattttactcagctt 275
Query: 120 catttttagtgctgaagccaggatgcattctgggactaattcagcagaatttgtttgaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 catttttagtgctgaagccaggatgcattctgggactaattcagcagaatttgtttgaca 335
Query: 180 ttgtctgccctcatgcccttgttccatggcccctatttaatttactaatctctctctctc 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 336 ttgtctgccctcatgcccttgttccatggcccctatttaacttactaatctctctctctc 395
Query: 240 tctctctctctctctctctctctctctctctctctctctc-c-ctctctccctcttt--- 294
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 396 tctctctctctctctctctctctctctctctctctctctctctctctctccctctctctc 455
Query: 295 ------------tctctctctccctctc--ccgccccc---------------------- 318
|||||||||||||||| || |||||
Sbjct: 456 tctctccctctctctctctctccctctctccctcccccctctctccctccctccctctct 515
Query: 319 -------tctctttcccccctttctccccctgtccctctcctccccacttctctctctct 371
|||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 516 ctctccctctctttcacccctttctccccctgtccctctcctcccctcttctctctct-t 574
Query: 372 ctcaccctgccctgttcctcaccaccttgttgcccctggctgatcaccccatgcaggctt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 g---ccctgccctgttcctcaccaccttgttgcccctggctgatcaccccatgcaggctt 631
Query: 432 tctgtatgggatctattatctaaaagggggctttcatcctctcctctgccccattaaaac 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctgtatgggatctattatctaaaagggggctttcatcctctcctctgccccattaaaac 691
Query: 492 ttccattttctgggcatagtagt 514
|||||||||||||||||||||||
Sbjct: 692 ttccattttctgggcatagtagt 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
