Query= MSMg01no301_l06.b1 MSMg01no301_l06.b1 CHROMAT_FILE:
MSMg01no301_l06.b1 PHD_FILE: MSMg01no301_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:10 2005
(618 letters)
>mm_chr10_5641064_5642081
Length = 1018
Score = 810 bits (419), Expect = 0.0
Identities = 463/485 (95%), Gaps = 14/485 (2%)
Strand = Plus / Minus
Query: 138 agagggagtgccaactcttcatcttccctctcctccggctctcacccatgaagagtcaaa 197
||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 1018 agagggagtgc-----cttcatcttccctctcctcaagctctcacccatgaggagtcaaa 964
Query: 198 ggcactgacatgctagctccctgcagggtaggaagacgatcctgctctcagat----gtt 253
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 963 ggcactgacatgctagctccctgcagggtaggaagacgatcctgctctcagatggcag-- 906
Query: 254 tttttttcctaactaagagaaaggaaatgcatgctgttctgagctccctgcctgtgacat 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ---ttttcctaactaagagaaaggaaatgcatgctgttctgagctccctgcctgtgacat 849
Query: 314 ttggtgatggcagcctgagctgactaagacggtacctgacccttcagagttgctcttggt 373
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 848 ttggtgatggcagcctgagctgactaagacggtacctgacccttcagagttgttcttggt 789
Query: 374 aaatatagtaatcaatattgtttcagtgaagtgaatgaatgagtcactcattggcatgat 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaatatagtaatcaatattgtttcagtgaagtgaatgaatgagtcactcattggcatgat 729
Query: 434 tacagaggcactactccttcagagctgcgtgattgccactcagggggcagaagagaggag 493
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgcagaggcactactccttcagagctgcgtgattgccactcagggggcagaagagaggag 669
Query: 494 gggcatctgctagctagcctaagggtcctggatccttagggagagtgggaggcagccttg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gggcatctgctagctagcctaagggtcctggatccttagggagagtgggaggcagccttg 609
Query: 554 actgtgattaaatgcaaggaaaggcttaagcaaaggctcaaaactcccatgctccgctat 613
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 608 actgtgactaaatgcaaggaaaggcttaagcaaaggctcaaaactccaatgctctgctat 549
Query: 614 ctgtt 618
|||||
Sbjct: 548 ctgtt 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_l06.g1 MSMg01no301_l06.g1 CHROMAT_FILE:
MSMg01no301_l06.g1 PHD_FILE: MSMg01no301_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:10 2005
(270 letters)
>mm_chr10_5599223_5599892
Length = 670
Score = 514 bits (266), Expect = e-150
Identities = 269/270 (99%)
Strand = Plus / Plus
Query: 1 gccatgcctgcatcaagccagagacatttccttgtacactagagacccagttaccaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccatgcctgcatcaagccagagacatttccttgtacactagagacccagttaccaattc 260
Query: 61 ttctagtggagttgctcaaagctgtcttatcttgccagggggaagcagaaattcttagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctagtggagttgctcaaagctgtcttatcttgccagggggaagcagaaattcttagcc 320
Query: 121 acagcttccctgtcattaccacttctcctgggagtctgtgtcttttccaagtttcaacca 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcttccctggcattaccacttctcctgggagtctgtgtcttttccaagtttcaacca 380
Query: 181 aggagaacagagagacttactagatattcatgtgttgtgcaaatagcgctgtacaaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagaacagagagacttactagatattcatgtgttgtgcaaatagcgctgtacaaagac 440
Query: 241 cttgtcttcctttctgttctctgctgtttt 270
||||||||||||||||||||||||||||||
Sbjct: 441 cttgtcttcctttctgttctctgctgtttt 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
