BAC Information

Click to search

BAC

Clone NameMSMg01-305N08
Chromosome10 (Build37)
Map Location 30,914,424 - 30,914,766
singlet/doubletsinglet
Overlap genenone
Upstream gene2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
Downstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305N08.T7 (MSMg01no305_n08.b1)MSMg01-305N08.TJ (MSMg01no305_n08.g1)
ACCAG430674AG430675
length1,3691,302
length of high quality
(start - end)
370 (518 - 887)344 (128 - 471)
definitionCHROMAT_FILE: MSMg01no305_n08.b1 PHD_FILE: MSMg01no305_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:15 2005CHROMAT_FILE: MSMg01no305_n08.g1 PHD_FILE: MSMg01no305_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAATCANNNNNGGGGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCACCTGAGGAATACCGCATGTCAGAGAAGCACTTGAAA
AAATGTTCAACATCCTTAACCTTCAAGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATCCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATATTTTTCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGCCCCTCAACTTTTTTTCCCCCCCCCCCAATGTGGNACATCTACA
CAATAAAAAAGGGGGCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCC
AAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAAC
TCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTT
GGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGCTGA
GATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGNGATCCACCCCA
TAATCAGCATCCCAACGCTGACACCATTGCATACACTAGCAAGATTTTAT
TGAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAG
CAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGTT
CCCCATGGAGGAAGTTGAAAAAGTACCCCAGAGCTTAAGGGTTTGCCACC
CTTTAGGTGGGACAAATTATTAGTTATCCGTACCCCGGAACTTTTGATCA
TACTGGAATTAATAAAAAAAGGCCAATCGCCCTCCCTGGAAAAAAACCCA
TGGATTGTAATTTTATTTCCCCACAGGGAAACCTGGCCTAAAGGAATTGG
TGTGTGCAATGACTGTTTTTCTTTTCATAACTCCTAACTAATCCTATAAT
TTTTGTATTTATTTTCCATTTGTTGACTCCATTTTTCCTATATAATCTAA
ACCCCGCCCTGATTCTTCGCTACTAGCTTTCTATACTTGATCATATTATT
ACATTTATATATCACGNCT
CCCTCTCTTTNNNNNACGCATGGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGGACACACAGAGNA
GAGTTTATTATGAGACTATCCCTGGAACTCTCAAGGGTAAGAGTTGACAA
AGTCATTTTGACAACTGTAGAGGAATATACTGTCAAAGGATGACCAAAGA
CAATGGCTAAAGGGGCCACTGCACCAACCTACATGTTAAGAAGGCTTTGC
TTTCTACTAATTAAAAATTTCTATGATAGAAATCTTTCCTGAGGCATATT
TTCTTGCCCTACTTAGATTAACTCTTAAGAGACAAGGCAAGACAATCTCT
TTTCTTTACTAGAAAACCTCTGATGAGAAAATAATTTGTATTATCTTTTG
AGCCAGTATGCTTTTTCCTACTCATGGTGAGACATAAAACTCTTCTTTCC
ATGCCTTGTCTTCTGAGGAAGAGGCCGACGCCCAGGGCATTAAAGATTGC
TATTTTTGTTCTTCCTTTAATTTATTCTTTGAAATTTTATACATATATAA
TATATTCTGGCCATGCTCATATTCATTCTCTCTCCCTTATCTTCCTCTTG
TTCCCACCAACTTTCTCTCTCTTCTTTCTGCCAAGTCCCTCATCCTGCTT
TTTACATCTTGGTTGTTTTGCTTTGTGCCCTCTTGCATTTAATGGATCCA
CTCTCGTGTGAGGCTATATCCATTGGAGCATGAGTAATTCATCAGTGTCT
ACATTACTGAGGACATTAGATTTCTGTTTGCCCACAGCCATAGACTTCCA
TTAGCATGTCTGGGTGGGGAAGGGACCCCTGAGCCCCTCCTCTATTTGTG
ACTGAATGTTTTCAGTCTAAGTCTTCTGCAAAGCTTACACCAGCAACCAC
AGCTACAGTGAGTTCTTGAAGGGCCTACCCAAGCCATGTCCCTGTTGCTA
AACTAATTTAAAAAAATTTTTTTTTAAAAAAAAATTTTTGTTTAGGGTTG
AGGACGCGTTTTAAAACAAAAAAAAATTATTCGGGGTATTTGTGAAAGGA
ACCCTCTTTTTTTCTTTTCGTAGAATAACATCTTGTTTGTTTTTTTCCAA
ACCCAAAAGAGGGAAAGAACCCCAATTTTGTTTAGGGTTAAAAAAATTCC
TCCCTACCTAAAGAATATAATGCTGGATCTCTTGGGAAACGGCAAAAAGT
TTTTGTACCCTTGGGGGTGTTTTTGTGTACACATATTTTCTTGTATTTTA
GTATTTATCTAAAAACATACATACCTATAGACGTGAGTATTACTTCATAT
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_n08.g1 MSMg01no305_n08.g1 CHROMAT_FILE:
MSMg01no305_n08.g1 PHD_FILE: MSMg01no305_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:15 2005
         (344 letters)



>mm_chr10_30914224_30914966
          Length = 743

 Score =  592 bits (306), Expect = e-173
 Identities = 335/350 (95%), Gaps = 13/350 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctcaagggtaagagttgacaaagtcattttgacaactgtagaggaatatactgtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctctcaagggtaagagttgacaaagtcattttgacaactgtagaggaatatactgtcaaa 484

                                                                       
Query: 61  ggatgaccaaa-gacaatggctaaaggggccactgcaccaacctacatgttaagaaggct 119
           ||||||  ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 483 ggatga-gaaaggacaatggctaaaggggccactgcaccaacctacatgttaagtaggct 425

                                                                       
Query: 120 ttgctttctactaattaaaaatttctatgatagaaatctttcctgaggcatattttcttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgctttctactaattaaaaatttctatgatagaaatctttcctgaggcatattttcttg 365

                                                                       
Query: 180 ccctacttagattaactcttaagagacaaggcaagacaatctcttttctttactagaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccctacttagattaactcttaagagacaaggcaagacaatctcttttctttactagaaaa 305

                                                                       
Query: 240 cctctgatgagaaaataatttgtattatcttttgagccagtatg-----ctttttcctac 294
           ||||||||||||||||||||||||||||||||||||||||||||     |     |||||
Sbjct: 304 cctctgatgagaaaataatttgtattatcttttgagccagtatgcaagac-----cctac 250

                                                             
Query: 295 tcatggtgagacataaaactcttctttccatgccttgtcttctgaggaag 344
           ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 tcatggtgagacataaaactc-tctttccatgccttgtcttctgaggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)