BAC Information

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BAC

Clone NameMSMg01-312G12
Chromosome10 (Build37)
Map Location 36,130,585 - 36,131,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041585, LOC667860
Downstream geneHs3st5, Hdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312G12.T7 (MSMg01no312_g12.b1)MSMg01-312G12.TJ (MSMg01no312_g12.g1)
ACCAG434633AG434634
length738736
length of high quality
(start - end)
696 (43 - 738)665 (72 - 736)
definitionCHROMAT_FILE: MSMg01no312_g12.b1 PHD_FILE: MSMg01no312_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:28 2005CHROMAT_FILE: MSMg01no312_g12.g1 PHD_FILE: MSMg01no312_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
ACTTCAGGGTAAGCATACAGGTTTATAGGCAGACACTGACGGGTAGGCTG
GTCAGGAATCAGGTAAAGGCTCTAGTTTCTGATCTCAAGGTTATATATAA
ACAGAATCACACAAATGGTTATATAACAGAGTACATCACAGTTTACTTTG
GAATCTCTGGACATTTGGTGTCAGCAGCTTGGGGTGACCCATAGTCCCTT
GAATAACCAACACAGGCACTCTTGAACATGGTAGATATCAGTATCAGTTC
CATATTGTCTAGACATAAGCTGTCCACTATGGACCTCTGTTCCATTTTTC
TGTGATGAAAAATGTCTCTCATCAACCACTTAACTACCAAGATGTGTCTC
CAAGAGCAGACAGTATATTTGTGTTGAAAAAATATGGAAACTTGTTTTTC
ATCTGTGTCTATAAGTAGAAAAGTAACAATGAAAACATGTCTTGGATCAT
TGCATACACTAGCAAGATTTTGCTGTAAGGACCCAGATATAGCTGTCTCT
TTGAGATTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCA
GCTATTGGATGAGTCACACGGCCCCCAATGGAGGAGCTAGAGAAAGTACC
CAAGGAGCTAAAGGGAACTGCAACCCTATATGTGGAACAACAATATGAAC
TAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATAT
TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAA
TATGGTTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATA
TTGTATATCAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTAGCCTTTTTATCTTATTGACAGTGTCTTTTGCCTTAAAGA
AGGTTTGCAATTTTATGAGATCCCATTTGTTGATTCTCGATCTTAAAGCA
GAAGCCATTGATGTTCTGTTCAGGAATTTTCCCCCTGTGCACATATCTTC
GAGTATTTTCTCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTATA
TATGGAGTTCCTTGATCCACTTATACTTGACCTTTGTACACGGAGAAAAG
AATGGATCAATTTGCATTCTTCCACATGATAACCACCAGTTGTGCCAGCA
CCATTTGTTGAAAATGCTGTCTTTTTTCAACTGGATGGTTTTAGCTCCCT
TGTCAAAGATCAAGTGACCATAGGTGTGTGCGTTCATTTCTGGGTCTTCA
GTTCTGTTCCATTGGTCAACCTGTCTGTCACTATACCAGTACCATGTCGT
TTTTATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCTTAGTGATTC
CACCGGAAGTTCTTTTATTTTTGAGAATAGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_g12.b1 MSMg01no312_g12.b1 CHROMAT_FILE:
MSMg01no312_g12.b1 PHD_FILE: MSMg01no312_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:28 2005
         (696 letters)



>mm_chr10_36130380_36131478
          Length = 1099

 Score =  830 bits (429), Expect = 0.0
 Identities = 445/451 (98%), Gaps = 3/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatacttcagggtaagcatacaggtttataggcagacactgacgggtaggctggtcagga 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aatacttcagggtaagcatacaggtttataggcagacactgacgggtaggctggtcagga 597

                                                                       
Query: 66  atcaggtaaaggctctagtttctgatctcaagg--ttatatataaacagaatcacacaaa 123
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 596 atcaggtaaaggctctagtttctgatctcaaggttttatatataaacagaatcacacaaa 537

                                                                       
Query: 124 tggttatataacagagtacatcacagtttac-tttggaatctctggacatttggtgtcag 182
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 536 tggttatataacagagtacatcacagtttacttttggaatctctggacatttggtgtcag 477

                                                                       
Query: 183 cagcttggggtgacccatagtcccttgaataaccaacacaggcactcttgaacatggtag 242
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cagcttggggtgactcatagtcccttgaataaccaacacaggcactcttgaacatggtag 417

                                                                       
Query: 243 atatcagtatcagttccatattgtctagacataagctgtccactatggacctctgttcca 302
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atatcagtatcagtttcatattgtctagacataagctgtccactatggacctctgttcca 357

                                                                       
Query: 303 tttttctgtgatgaaaaatgtctctcatcaaccacttaactaccaagatgtgtctccaag 362
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tttttctgtgatgaaaaatgtttctcatcaaccacttaactaccaagatgtgtctccaag 297

                                                                       
Query: 363 agcagacagtatatttgtgttgaaaaaatatggaaacttgtttttcatctgtgtctataa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agcagacagtatatttgtgttgaaaaaatatggaaacttgtttttcatctgtgtctataa 237

                                          
Query: 423 gtagaaaagtaacaatgaaaacatgtcttgg 453
           |||||||||||||||||||||||||||||||
Sbjct: 236 gtagaaaagtaacaatgaaaacatgtcttgg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1099
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1089
Effective search space:   747054
Effective search space used:   747054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)