BAC Information

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BAC

Clone NameMSMg01-312H04
Chromosome10 (Build37)
Map Location 44,743,149 - 44,743,465
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H04.T7 (MSMg01no312_h04.b1)MSMg01-312H04.TJ (MSMg01no312_h04.g1)
ACCAG434664AG434665
length736731
length of high quality
(start - end)
321 (43 - 363)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no312_h04.b1 PHD_FILE: MSMg01no312_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:31 2005CHROMAT_FILE: MSMg01no312_h04.g1 PHD_FILE: MSMg01no312_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATCCTCTAAACAACCAAAACGAAAACGAGCACAAACAGGTCTGTCAG
AAGATAGTTTACATGTCTTAGGGTAGCACAAACTGGCAAGGCACAGAACC
ACCGCAAGGACTGGAGCTATGCCATGGCAGAGTGAACCTGCATTACTTCA
GAAGGTGTTTGGCACCACCTAATACAAAAGATCAATCTCAAGGGTGAGGC
AGATAATCAGAGAAAATAAGAAACTGATATACTGTGTCCTGGGGCTGGGC
TGGAGAATTTGTCTGTGGGCATAGAGGCCGAGGACACCAGTATCCTGCTC
TTTCACTCTCTTTTTCTTACACCCCCCCACCCACTGCACCTAGAGTGTGG
CTGGCAGCCAAGAACACCCGGAAATAATAAAAGACTCTGCTTCCGGTGGG
GTAGAGGTTTCCGGGATGCACAGCTTTGACATCTGTGAATCCTATACACC
ATTATTTCCTCTTTATTTTACATTTTAGGTCATATCCAAAAGTTTAGTCA
GTATTATATATAATATATATAATACATATAATATCTGTAACATATACGCA
TATTATATATATTATGTGCATATATACCTATATACCTATTTGAATCCCCG
CTCCTTGAACCCCTGCACCCCGCCTTCCTTACCTTACTATTACTTCTTCC
CATTCCCCGCAAATTGTTTGTTTTTGTTTGCCCTCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATCCAGTTGTACCGATAATTCACAAAA
CAAAGAATGAAAAAATAACCCATTCGAAAATGGGTCTGGGACCTGAATGA
CGAGTTCACATAGGAAGAAAAAAAATGACTAAGAAATGTCTATTTAAATA
TTTTTCATCCTTAGCAATTAGGGATGTGCAAATCCAAACAACCTTGAGAT
TTCCTCTTACCCTAGGCAGAATGGCAAAGGCCAACAATTACAACTGACAG
CAAATGTAGAAGGGGTTCGGGGAGCCTCATTCCCCATTGATGGGATAGCA
AACTTGGGTTTTTTTTTATGGACCCCCCCCCCCAAGCAAAAGATACATCT
ACCATATGTCCTAGGTACACCATGCCTTAGAGTATGCTCAGGGGAAATTC
TTCTCCACTAATTCTTAAACATGTGGTTATTCCTGCTCATTTACAGTAGC
TAGGAAATGGAAATAATCTGTCCCTAAACATAAATATATGGACACTAATA
ATAAGGTAAATATATGCTTTGGAGCATGGTTCAGCTGCAAAGAAAAATGA
AACAATGAACTTTGCTGGTAAAAGGGTGGAACTAGATAAGATCATATTGA
GTCTGGTTATCTGACCATAAAGATGAATGCTTCCTGACCCTCCCGCATCA
TTAGTTCCCATTTCCAAATCTATATGTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h04.b1 MSMg01no312_h04.b1 CHROMAT_FILE:
MSMg01no312_h04.b1 PHD_FILE: MSMg01no312_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:31 2005
         (321 letters)



>mm_chr10_44742945_44743665
          Length = 721

 Score =  543 bits (281), Expect = e-159
 Identities = 308/317 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatcctctaaacaaccaaaacgaaaacgagcacaaacaggtctgtcagaagata 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 521 gaattcaatcctctaaacaaccaaaacgaaaacgagcataaacaggtctgtcagaagata 462

                                                                       
Query: 65  gtttacatgtcttagggtagcacaaactggcaaggcacagaaccaccgcaaggactggag 124
           |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct: 461 gtttacatgtcttagggtagtacaaactggcaagggacagaaccaccgcaaggattggag 402

                                                                       
Query: 125 ctatgccatggcagagtgaacctgcattacttcagaaggtgtttggcaccacctaataca 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 401 ctatgccatggcagagtgaacctgcattacttcagaaggcgtttggcaccacctaataca 342

                                                                       
Query: 185 aaagatcaatctcaagggtgaggcagataatcagagaaaataagaaactgatatactgtg 244
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 341 aaagatcaatctcaagggtgaggcaggtaatcagagaaaataagaaactgatatcctgtg 282

                                                                       
Query: 245 tcctggggctgggctggagaatttgtctgtgggcatagaggccgaggacaccagtatcct 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcttggggctgggctggagaatttgtctgtgggcatagaggccgaggacaccagtatcct 222

                            
Query: 305 gctctttcactctcttt 321
           | |||||||||||||||
Sbjct: 221 gttctttcactctcttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)