BAC Information

Click to search

BAC

Clone NameMSMg01-318H17
Chromosome10 (Build37)
Map Location 17,164,691 - 17,165,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318H17.T7 (MSMg01no318_h17.b1)MSMg01-318H17.TJ (MSMg01no318_h17.g1)
ACCAG438271AG438272
length762753
length of high quality
(start - end)
233 (442 - 674)343 (83 - 425)
definitionCHROMAT_FILE: MSMg01no318_h17.b1 PHD_FILE: MSMg01no318_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:40 2005CHROMAT_FILE: MSMg01no318_h17.g1 PHD_FILE: MSMg01no318_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTGTCCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTCCCTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATATTTTTCTTTTGTCTCTCGCCCCTTATGTGAAGATCC
TTGATCCACTTAGATTTGACCCCCCCCCCCCCCACACAAGAATGGATCGA
TTCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
ATTGGTCTACCTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACA
ATTGCTCTGTAGCAAAGCTTTAGGTCTGTCATGGTGATTCCGCCAGAAGT
TCTTTTATCCTCGAAAAGATTTTTTGCTTCCNAAGTTTTTTTGTCCTTCC
GAATTATTTTTT
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTTTAGAAGACCTG
TTCTTTCTCTCCCTTTTTCTGTATCTATTGACTATTCATATAAGGAATAT
TCATGATCATATTTTTCATGCCTTGGGAATCAGCAGAAGACTGTCCTGTA
TCACTTCATGAAGGAGACACGCACCTAGTCTGGACGTTGTCAATAATCAT
TCAGCTGGTTTTTTGATGCAAGAGACAGAGTAAACATGAAATACATGAGG
CCACTACCAATGGAGCACTGCAGATATTTTTAAAATAAACATTTTAAAGC
AGAAGGGTTATACTTTAAACAAAAGTATTATAGTACGATAAATACTTAAA
TCTAAAACAGAGTTGCTTATTATTACCCCCACCCCCATTATCAATTATAG
CACTGTACATAATTGTGTCTAGTGTTGTTTTATACAGTTAGCAGGGTAGT
GGTTGCATTTACACCAATCCTACTGCAAATATATAATTTGCTAAGACATT
ACAGTGGCTCAAATCTAGCTAGCTGATAGGAATCTTTTAGCTCCATTATA
ATCTTATGGGACCACCCTCCTATACACAGTCTGTCACAGGCCAAAATAAC
ATTATATAGCATGACTACTCTAAAATAATTTCACTTTGCTCAAATTACTC
TCTATTTGCCCATTGGGAGTTCTGGCAGTCGTCTGTGGTTTGGTGTCTGC
TCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_h17.g1 MSMg01no318_h17.g1 CHROMAT_FILE:
MSMg01no318_h17.g1 PHD_FILE: MSMg01no318_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:40 2005
         (343 letters)



>mm_chr10_17164491_17165238
          Length = 748

 Score =  576 bits (298), Expect = e-169
 Identities = 334/348 (95%), Gaps = 5/348 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactttagaagacctgttctttctctcccttttt-ctgtatctattgactatt----c 55
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    |
Sbjct: 201 tttactttagaagacctgttctttctctcccttttttctgtatctattgactatttattc 260

                                                                       
Query: 56  atataaggaatattcatgatcatatttttcatgccttgggaatcagcagaagactgtcct 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atataaggaatattcatgatcatatttttcatgccttgggaatcagcagaagactgtcct 320

                                                                       
Query: 116 gtatcacttcatgaaggagacacgcacctagtctggacgttgtcaataatcattcagctg 175
           ||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||
Sbjct: 321 gtatcacttcatgaaggagacactcacctagtctggatgatgtaaataatcattcaactg 380

                                                                       
Query: 176 gttttttgatgcaagagacagagtaaacatgaaatacatgaggccactaccaatggagca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttttgatgcaagagacagagtaaacatgaaatacatgaggccactaccaatggagca 440

                                                                       
Query: 236 ctgcagatatttttaaaataaacattttaaagcagaagggttatactttaaacaaaagta 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttgcagatatttttaaaataaacattttaaagcagaagggttatactttaaacaaaagaa 500

                                                           
Query: 296 ttatagtacgataaatacttaaatctaaaacagagttgcttattatta 343
           |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatagtaggagaaatacttaaatctaaaacagagttgcttattatta 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 748
Length adjustment: 9
Effective length of query: 334
Effective length of database: 739
Effective search space:   246826
Effective search space used:   246826
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)