BAC Information

Click to search

BAC

Clone NameMSMg01-318J14
Chromosome10 (Build37)
Map Location 40,755,837 - 40,756,210
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1
Downstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318J14.T7 (MSMg01no318_j14.b1)MSMg01-318J14.TJ (MSMg01no318_j14.g1)
ACCAG438355AG438356
length757757
length of high quality
(start - end)
372 (49 - 420)346 (75 - 420)
definitionCHROMAT_FILE: MSMg01no318_j14.b1 PHD_FILE: MSMg01no318_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:48 2005CHROMAT_FILE: MSMg01no318_j14.g1 PHD_FILE: MSMg01no318_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCTACAATAAATACCAAATGAACAGTGGAGACTAGAGTCATTGAAT
CTTCTCAAGCAGTTCTGGGGAACTTCCTGTCCTCACCACCATCCTGTCTT
CCCTTCAGACCTGGGGGGGAAAGGTCAGAAGCCAAAGGTGAGTATGTCTT
TCCACGATCCCATAGGGCTGCTTTAAGTTATGAGAAGTACCTGGGCTACC
TGGGCTTGAACTTTCGAGTCTCGGATTCCATGTGACCTGCTTCCTAAGGC
TTTTCACTTGACAAAAAAATTGCATGCCTAGGAAGCGTCAAAATTCTATC
AAGATTAATTATGCAATTTCTGTCTATAAATGACATACCTCCTGTACCCA
GTGAAACCCACCCATGCTCTACCCCCACGCGACAGCCACATCACTAACAA
AGCCTCCTCCGCCTCAGTTCCCAAAGGTGAGTACCTGCTGCTGGGGAGGC
ACTGTCACCCCATGGGGGAAGGGAATTAAGGATGGTGTGAGAACCCAGGT
TTGCCAAAGTATGGCTCTGGACAGGCAGGTCATCAAGCAGAAGTGCGAGG
GAGTGCAGAGGTCAGTGGACCCCACCACGTTTTCCCCTTTTGAACAGAAA
TCCACTCTTGCTGAAGGCTATGACCTGCCCTCTTCCTATGATACTGTGTC
TAACCACAGCATGAGGCTTTTCCATTGCTAAGGTTAAGCACAGTATATTT
CTCTCAG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTGAGTCCAGTGAATTCAAAATG
ATTTCAAAGAAACTAATTGTAGAGAAATTCTAATCCAGCAACGTGGCTAC
TTTTGCAAGGGATCACATCTAAAGACCTTCTAGGTCTGTGTGATCCAGCA
GCAATGACATACTTTTAATCCCTCTGGCTTAAATACATACCCTTGGGCTG
CAATAAACACCTTTAGCACACACTTTTAATCCCAAACAATGAAGGTAAAG
TTAACTTGTAGAAGGAAGCAGTCATGTTTGAATGTGAAATCTGAGGGGCA
GACAAAGTGATGAATCAGAGAAAGATTTGACAGAATGAGTCAGAGATAGG
ATACACCCAACTCTCACAGCCCCCCCACATGCAACTTAAGAGAGCATCGC
AGGGAGAGAAACCAGTTAGAATAGGTCTGCTGGGAGAGGAGTTTGGGCCA
GAACAGCTGAGTTGAACCAGCTGGCTAGAGTTCAGGAAAAAACTAGAAAG
GGTGAGCATATTCAGCAGTAAACCTCCTGAATGACAATTACATCTGGAGA
ATAAAAGATACTTTACAACTAACAAATGACTTATCTCTAAGAAGCTAAAA
AGGTCCAAGTTCAAGGAAGAAACTTGCTGGTCTAAAACACTATTATATTT
TTAACTTAGTCAATAATTTGAGGAAATGATTCTGTATCAATAGGCAGACC
ATCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_j14.b1 MSMg01no318_j14.b1 CHROMAT_FILE:
MSMg01no318_j14.b1 PHD_FILE: MSMg01no318_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:48 2005
         (372 letters)



>mm_chr10_40755523_40756294
          Length = 772

 Score =  658 bits (340), Expect = 0.0
 Identities = 363/374 (97%), Gaps = 6/374 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcctacaataaataccaaatgaacagtggagactagagtcattgaatcttctcaag 61
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattcctacaataaatagaaaatgaacagtggagactagagtcattgaatcttctcaag 629

                                                                       
Query: 62  cagttctggggaacttcctgtcctcaccaccatcctgtcttcccttcagacct------g 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 628 cagttctggggaacttcctgtcctcaccaccatcctgtcttcccttcagacctggggggg 569

                                                                       
Query: 116 ggggggaaaggtcagaagccaaaggtgagtatgtctttccacgatcccatagggctgctt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggggggaaaggtcagaagccaaaggtgagtatgtctttccacgatcccatagggctgctt 509

                                                                       
Query: 176 taagttatgagaagtacctgggctacctgggcttgaactttcgagtctcggattccatgt 235
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 508 taagttatgagaagtacctgggctacctgggcttgaacttttgagtctcgaattccatgt 449

                                                                       
Query: 236 gacctgcttcctaaggcttttcacttgacaaaaaaattgcatgcctaggaagcgtcaaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 448 gacctgcttcctaaggcttttcacttgacaaaaaaattgcatgccaaggaagcgtcaaaa 389

                                                                       
Query: 296 ttctatcaagattaattatgcaatttctgtctataaatgacatacctcctgtacccagtg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttctatcaagattaattatgcaatttctgtctataaatgacatacctcctgtacccagtg 329

                         
Query: 356 aaacccacccatgc 369
           ||||||||||||||
Sbjct: 328 aaacccacccatgc 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)