BAC Information

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BAC

Clone NameMSMg01-319E08
Chromosome10 (Build37)
Map Location 105,615,854 - 105,616,081
singlet/doubletsinglet
Overlap genenone
Upstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
Downstream geneEG639162, Ppfia2, Olfr1556-ps1, 8430416H19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319E08.T7 (MSMg01no319_e08.b1)MSMg01-319E08.TJ (MSMg01no319_e08.g1)
ACCAG438841AG438842
length725721
length of high quality
(start - end)
136 (201 - 336)230 (126 - 355)
definitionCHROMAT_FILE: MSMg01no319_e08.b1 PHD_FILE: MSMg01no319_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:35 2005CHROMAT_FILE: MSMg01no319_e08.g1 PHD_FILE: MSMg01no319_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGCCTTAGCACCGGGTTCAACAGGCTCTGTGTCCAAGAGTATAAA
CACTTTAAGCAGATGCATAGGACCATCTCTAAGAAGAACCTCTAGGAGAC
CATCCTTCAGTTGGTTTCACCAGTCTTGCAGCAAAGTTTATTCAACGCCG
AATACAAATGATTTATCCTGTGGGAATTTATGTTTTGGAAAAAGGCCACA
TAGACTGGCTACAGAACAAAAAATTATAAGTTATAAAAATAATTTTTATT
TTTGTGAAGGTGTGTGTGTGTGTGTTCCCATTGTGTTCCCATGAAGGCCC
ATGAAGATGGTGTTGTATTCCTGGATCTGGACATACAGGCAGTTGTGAGT
AACCAAACATGGGTGCTCCCCCCCCCAACTTGGAACATCTGAAAGAGCAA
GAGGTCTAAACCACAAAGCCATCTCTCTATTTCCATAAGCGTAATTGTTA
AATATACGTTATTATAATCTAGAAAAACATATCACGCTGTAATCAATTTA
TGAAGACTGGTCTTACATGTGGTGAGTAAATATGGTAAACATTATCTATA
ATTGTTTTCACTAAGCTCTCATTAATCGCTTCCTTAAAATAATTTATAAA
TATGTTAGTCCTTGCTCTAATATATTGAAGCCTTATAAGTACCTAGAAAC
ATTGGGTTATTATGTTCATCTACAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCGCTGTGCTACAAGACTGACTA
CCTATTTGAGGGACTCTTGGCTCTGTTCTGTGGCTGGCTCTGAAATGGGA
AGAGCCCTACCCCTTCTGGTCACAGTATGAGATTCTAATTTTCATTTTTG
AAATTTCGGAGGTTGGGACATGCTCTATCTTGCCAGTTTTTCTCCTGGCA
CAACCCACATACCCACAAATGATGTCACTGCTCAGGCGATCAGGATGGTG
ATTGTGTAAATAAAGATGGGTCCAATTATTTGGGGTCCTCTGCTTGAGTG
TCAGCAGGTCTCTGTCTTCACTTTCCGGCATCCCAGACATCTGTGCTCAG
GTTCCAGAACCCCATGGCCCCCCCCACTCCAGCAGTGTAGTCCAAGATGG
GAGCAGAACCATAGCAATTCTTCTGCCTCACGCTCCAAAGTACAAGAATT
ATAAGCATACCACCCCAGGTTTAAGATATTTAATTATTCATAGGTTATCT
TTTATATGTCTATTTGTGTTTTATAAACCTGGCTCTCTCATAACTACCTA
TATAGACCAGGCTGGGGTCCAACTCACAGAGATCCTCCTGCTTCTGCCCC
CTGAGTACTTGAATCTAGTATATTTGCTAGCAGACTACTATGCTATTTCT
GTTCTAGGGTAGAGATTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_e08.g1 MSMg01no319_e08.g1 CHROMAT_FILE:
MSMg01no319_e08.g1 PHD_FILE: MSMg01no319_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:35 2005
         (230 letters)



>mm_chr10_105615654_105616283
          Length = 630

 Score =  327 bits (169), Expect = 4e-94
 Identities = 214/229 (93%), Gaps = 2/229 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtggctggctctgaaatgggaagagccctaccccttctggtcacagtatgagattc 60
           |||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||
Sbjct: 201 ttctgtggctggctctgaaacggggagagccctacacattctggtcacagtatgagattc 260

                                                                       
Query: 61  taattttcatttttgaaatttcggaggttgggacatgctctatcttgccagtttttctcc 120
           |||||||||||||||||||||||||| ||  |||| ||||||||||  ||||||||||||
Sbjct: 261 taattttcatttttgaaatttcggagatttagacacgctctatcttatcagtttttctcc 320

                                                                       
Query: 121 tggcacaac-ccacatacccacaaatgatgtcactgctcaggcgatcaggatggtgattg 179
           |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccca-ctccacatacccacaaatgatgtcactgctcaggcgatcaggatggtgattg 379

                                                            
Query: 180 tgtaaataaagatgggtccaattatttggggtcctctgcttgagtgtca 228
           |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 380 tgtaaataaagatgggtccagttatttggggtcccctgcttgagtgtca 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)