Query= MSMg01no319_f07.b1 MSMg01no319_f07.b1 CHROMAT_FILE:
MSMg01no319_f07.b1 PHD_FILE: MSMg01no319_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:39 2005
(233 letters)
>mm_chr10_4640693_4641325
Length = 633
Score = 404 bits (209), Expect = e-117
Identities = 227/233 (97%)
Strand = Plus / Minus
Query: 1 tgctcagagactccagaatcaaatcatggcaatctcagtggggcaagcgcatcttactgg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 433 tgctcagagactccagaatcaaatcatggcaatctcagtggggcaagcacatcttactgg 374
Query: 61 atcatttagcatcccctcaaggtcttaatgcacaaatatttgaagataggtaaggtctct 120
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 373 atcatttagcatcccctcaaggtcctaatgcacaaacatttgaagataggtaaggtctct 314
Query: 121 ctgtggtgttccttttccaactctaagtatctactttggcctgagagactgggtctttat 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 313 ctgtggtgttccttttccaactctaagtatcttctttggcctgagagactgggtctttat 254
Query: 181 taagtctacaagaatactgggttcctacagaaacataggagtggttcactgtc 233
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 253 taagtctacaagaatactgggttcctacagaaacatcggagtggctcactgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no319_f07.g1 MSMg01no319_f07.g1 CHROMAT_FILE:
MSMg01no319_f07.g1 PHD_FILE: MSMg01no319_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:39 2005
(557 letters)
>mm_chr10_4458877_4459832
Length = 956
Score = 990 bits (512), Expect = 0.0
Identities = 545/564 (96%), Gaps = 15/564 (2%)
Strand = Plus / Plus
Query: 1 tctatagtttcagaaatttaactttatgggaaacctccctttttctgaacctcttctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatagtttcagaaatttaactttatgggaaacctccctttttctgaacctcttctgag 260
Query: 61 aaaaggaggctcagagaaagatggggaagtgagattagagggaggagttaggatgagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggaggctcagagaaagatggggaagtgagattagagggaggagttaggatgagagg 320
Query: 121 agagagaggaagctgcaatcaggatataagataaataaattacttagtaaaaatagaaat 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 agagagaggaagctgcaatcaggatataagataaataaattacttaataaaaatagaaat 380
Query: 181 ttaattctatatctgtggaatccagtgtgtgcaatattcagctatactacagattgaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattctatatctgtggaatccagtgtgtgcaatattcagctatactacagattgaatc 440
Query: 241 agtacatgagtttatctccctagagtcaatatacctggcattaaatttcaaaataattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtacatgagtttatctccctagagtcaatatacctggcattaaatttcaaaataattct 500
Query: 301 tctaattgcaacatttcctagaatgcagagtagaaatatttaacg-------cccccccc 353
|||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct: 501 tctaattgcaccatttcccagaatgcagagtagaaatatttaacgttgtaaac------- 553
Query: 354 aaatacaaccttatttttgtaatgtcgttgattgcctgttagccagtgtgcattcatttt 413
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 554 aaacacaaccttatttttgtaatgtcgttg-ttgcctgttagccagtgtgcattcatttt 612
Query: 414 ctgtgtctgtgtttactttttataaatatacagaatggggtagccaaaatctacctgggg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctgtgtctgtgtttactttttataaatatacagaatggggtagccaaaatctacctgggg 672
Query: 474 taccccctcttaatagctatctttaacatcagagaatctcattatggcttctccctgtct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 taccccctcttaatagctatctttaacatcagagaatctcattatggcttctccctgtct 732
Query: 534 ttctgagtatctaaatcatgtgtt 557
||||||||||||||||||||||||
Sbjct: 733 ttctgagtatctaaatcatgtgtt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space: 517462
Effective search space used: 517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
