BAC Information

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BAC

Clone NameMSMg01-320C24
Chromosome10 (Build37)
Map Location 34,783,991 - 34,784,190
singlet/doubletsinglet
Overlap genenone
Upstream geneBB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320C24.T7 (MSMg01no320_c24.b1)MSMg01-320C24.TJ (MSMg01no320_c24.g1)
ACCAG439491AG439492
length692799
length of high quality
(start - end)
199 (101 - 299)193 (184 - 376)
definitionCHROMAT_FILE: MSMg01no320_c24.b1 PHD_FILE: MSMg01no320_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:39 2005CHROMAT_FILE: MSMg01no320_c24.g1 PHD_FILE: MSMg01no320_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCCTATAGGGAGAGGATCCGCGGAATTCACCTTGAAAATGAAAAGTTG
GCACCTGTGGTATGATTAAGGCCTTTTATTATCCTCATTGTGTACCACCA
AGACCCTGTATGTTATAGGGGGGGAAGCTTTTGAATTGTTTTTGTTCTGG
GGCCTGACTCATTTAATTTATGAGAGGTGAGGTTACAGACAGTTTTTAAA
ACATGAGGAGAAAAAAAGATAGACTTTCTGTCATTTAGGAGTTTACAACT
TACTGAGAGAAGATTTATAATGTGAGATGTTCTCTGTAGAGATATTTTAA
AAAATTACATTCTATTAGAGGATGAAGGATATGTTTGAGTAAATTCCCCC
CCCCCCCCATATTCTGGTTGATTACCTCCTGCTCCCCCTTTTCCCCTGAC
TCAAAGAAAAAGAAGAAATGTCTTTGATTATCTTCCTGCTTACTCTTATA
GCTGCGGTGGCCTTGGATTGACGTTGCCTCTGACAGTTTCAGGCTTGGTT
GCTTTTATGCAGTACACAAATAGCATCATAAAGAGGATTTACCAAAGGAG
AGAGTGCACATTCAGTGATCAGAGTTTGAATAAAAAAACACTTGAGCTTA
CTTTTAAAAATATCCTGCCTAATAATATTACCGGTACATCAATATTACTA
TGCATGTCACATCAACAAGTGTGCTGCTCATTGGAAACTTAG
TTCCTCCCGCCCCCGCCTTTCCTTTTCTTTTCTTTTTNANNANAACAATA
NNCTTTTCTATGATACGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTAACCTGAGATAAAA
ATTCACTGAACCCCCAACCCCTGAATGATCCACCTAGTGGGGAACCCCCA
CTCAATTAGTAATTCGGCACGCACCCAAGGAATCACGAGAAACCATCTTG
ATGCAAACACATGAGGTAGTTTAATGATGGAGCTCCTGATGACAGAGCTC
CGGACCAACACGTATCTTACACAGAAGTCAATGGTTGTCGGCCATGTGGC
TCGAAAGCTAGAGGTTTTTATAGAAAAGGTTCTGTGGCTCGGGGGAGGAA
TTGGCGCGGTTTCACATGTANCTGATTTTCCCCCCCTCCCCCCACTGAAC
GTATATATTGAATTAACAGCAGAGTATCTGGTAAAAAAAAAAACCAAGTC
AGAAGGGGGGGAGATAGGAAGGCTCCAGGCCAGACTGGACATGTCATTCT
CTTTATCTTTATGGTCAAGCAGCCTTATTGAATGTCTTAATGATGGGTCT
GCCCGGACATGTCCTGACCTGCTCCACAATCTTCTCAGCCCCAGGCTTTC
TAAACTCACAAACAACTTCTGTACATATTATTATTTACTTTACATGTAAT
CACGTTCTTAAACATTCATTCTTCTTTCACGTTCCTGGTCCAGAAGATCA
ACCACCTCACCGTTTATGTGCTTTTTTTTTTGCGCTCACCCCGCTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_c24.b1 MSMg01no320_c24.b1 CHROMAT_FILE:
MSMg01no320_c24.b1 PHD_FILE: MSMg01no320_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:39 2005
         (199 letters)



>mm_chr10_34783791_34784390
          Length = 600

 Score =  379 bits (196), Expect = e-110
 Identities = 199/200 (99%), Gaps = 1/200 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccctgtatgttataggggggg-aagcttttgaattgtttttgttctggggcctgact 59
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccctgtatgttataggggggggaagcttttgaattgtttttgttctggggcctgact 260

                                                                       
Query: 60  catttaatttatgagaggtgaggttacagacagtttttaaaacatgaggagaaaaaaaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttaatttatgagaggtgaggttacagacagtttttaaaacatgaggagaaaaaaaga 320

                                                                       
Query: 120 tagactttctgtcatttaggagtttacaacttactgagagaagatttataatgtgagatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagactttctgtcatttaggagtttacaacttactgagagaagatttataatgtgagatg 380

                               
Query: 180 ttctctgtagagatatttta 199
           ||||||||||||||||||||
Sbjct: 381 ttctctgtagagatatttta 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 600
Length adjustment: 8
Effective length of query: 191
Effective length of database: 592
Effective search space:   113072
Effective search space used:   113072
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)