BAC Information

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BAC

Clone NameMSMg01-320O02
Chromosome10 (Build37)
Map Location 57,673,188 - 57,673,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320O02.T7 (MSMg01no320_o02.b1)MSMg01-320O02.TJ (MSMg01no320_o02.g1)
ACCAG440003AG440004
length771794
length of high quality
(start - end)
669 (101 - 769)58 (516 - 573)
definitionCHROMAT_FILE: MSMg01no320_o02.b1 PHD_FILE: MSMg01no320_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:29 2005CHROMAT_FILE: MSMg01no320_o02.g1 PHD_FILE: MSMg01no320_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTTTTTTTNNNNTTCTACTCCTCCTAACAACCNNCCACCNNNN
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGTGTTCTGCCCCTGTCTTTTACAAACAGCATTACGGCA
ATATTAAGGATGCTTTTCTACTCACCCAGTGTCAAGTTCCATTCTAGATG
CCATGGCACTTACTGTCAACCAGCCCTTCTTTCTCTATTCAAACGTTCTC
TCTCACTGAACTCTAAAACGTATGGGAATAAATGACCTTAAACTGTCCAT
GTTTACTAGTGTTGTTGTCTTTCAGTGGGCATCCTCATTAACTTATCCAC
GCATCTCAAAATATGTAGATGCTGCCTGATTCATATCCCCAGGGATTGTT
TCTTCCAGGAGGACACTGCCTTTGAAACAATGCCCAGGCTCTCCTGATCT
GCTGCATCTAGTAACTTCTCCACCCTTCATCTTTCATCCCTGCTTACTTG
GGGTTTTGCAGTCACTGGCGTGAGAGCTCTTGGTATTCTAACATACTGTC
TTCTAAAAATCAGTGTGGATACATTCAGGACAAATCACGAATTCTCTTCC
ATAACTCATTAAGAGCCTGTCATATTGGATCATGTCTCATCTATTTCTTT
CTCTTTCAGGACACATTAAATAGAGATTTGCATGTGAAGTGTATAAGAAA
TAGTCTATCTGGGCAAGGAAAGAAGTGTATTCTGGAGAAATGGAGAAGTT
TACACAAAGTCCTATATTCTT
NNNNNNNNNNNNNCGGCCGGCCTTNNNTGTCGGGCCGGGNANGGGGGAGG
CNNNNNGGAAGGAAGAAGAGGGTAGGCCTGGGGGCCGCCGTTTCGAAAGN
GGGAGGNGANNNGAGAGAATTGCCAAAAAAAGGGGNGNANGGGNAGGAGN
AGGGGNNCGAGGGGAAGGGANNNAGTTTTCCGCAAAAAGGGGGGGGANAA
NANGAANNCAGAAGGGGNACCAGNAAGGGNNCGAGGGNAAGNACGGNAGG
GGAAGGGCAAAANAGANCANNNCNGAGNNCCCGGAGAGACACCCCGGGNN
GGCACGGAGGATGGTACCAAGGNNCAGNNACAACCAAAGAANCCNNCNAA
GGCNAGGCCGCCCCGCCCCAGAAGATATTTTTTTTTATGAGNGNGGGNCG
GGACAGCACCCAAGGGAGGTTTTGTGTCCCCGCCCCCCCCGCCATGGTTA
ATGGCAACTCATCCGAGGATGAGAAGATCATAAAGAAAAAAACAAAAAGG
GTGGGGGGGGGGGATTTAATTCAAAAGGGGGATATGTTGGAGACCATACT
GTGAGAAAGCAAGCCTTTTACACTCTCCCACCCTAAAAAACCAAATGGGC
TTGTGCCAAGGAACAGGTCATCTCCCCCTCCTCCCAGATCCCATACTGGC
GACTGAAGGTGAAAAAGCTGAATTATAGGGCTCCTCTTCTGAAGACTCTT
CCTGAGTTCCAGGAAATCAAGGATATTAGGGAAGAGGGGGGAGGGCCAAG
CTGGAAGACCCAAAGGTTGGATAAGGAATAAACTAAAATGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_o02.b1 MSMg01no320_o02.b1 CHROMAT_FILE:
MSMg01no320_o02.b1 PHD_FILE: MSMg01no320_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:29 2005
         (669 letters)



>mm_chr10_57672984_57674052
          Length = 1069

 Score = 1147 bits (593), Expect = 0.0
 Identities = 647/665 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtgttctgcccctgtcttttacaaacagcattacggcaatattaaggatgct 64
           ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 869 gaattcctgtgatatgcccctgtcttttacaaacagcatgacggcaatattaaggatgct 810

                                                                       
Query: 65  tttctactcacccagtgtcaagttccattctagatgccatggcacttactgtcaaccagc 124
            |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cttctactcagtcagtgtcaagttccattctagatgccatggcacttactgtcaaccagc 750

                                                                       
Query: 125 ccttctttctctattcaaacgttctctctcactgaactctaaaacgtatgggaataaatg 184
           |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 749 ccttctttctctattcaagctttctctctcactgaactctaaaacatatgggaataaatg 690

                                                                       
Query: 185 accttaaactgtccatgtttactagtgttgttgtctttcagtgggcatcctcattaactt 244
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 accttaaactgtccaggtatactagtgttgttgtctttcagtgggcatcctcattaactt 630

                                                                       
Query: 245 atccacgcatctcaaaatatgtagatgctgcctgattcatatccccagggattgtttctt 304
           |||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 629 atccacacatctcaaaatatgtagatgctgcctgattaatatccccagggtttgtttctt 570

                                                                       
Query: 305 ccaggaggacactgcctttgaaacaatgcccaggctctcctgatctgctgcatctagtaa 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 569 ccaggaggacactgcctttgaaacaatgcccatgctctcctgatctgctgcatctagtaa 510

                                                                       
Query: 365 cttctccacccttcatctttcatccctgcttacttggggttttgcagtcactggcgtgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 509 cttctccacccttcatctttcatccctgcttacttggggttttgcagtcactggcatgag 450

                                                                       
Query: 425 agctcttggtattctaacatactgtcttctaaaaatcagtgtggatacattcaggacaaa 484
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 449 agctcttggtattctaacatactgtcttctaaaagtcagtgtggatacattcaggacaaa 390

                                                                       
Query: 485 tcacgaattctcttccataactcattaagagcctgtcatattggatcatgtctcatctat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcacgaattctcttccataactcattaagagcctgtcatattggatcatgtctcatctat 330

                                                                       
Query: 545 ttctttctctttcaggacacattaaatagagatttgcatgtgaagtgtataagaaatagt 604
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 329 ttctttctctttcaggacacattaaatagagattttcatgtgaagtgtataagaaatagt 270

                                                                       
Query: 605 ctatctgggcaaggaaagaagtgtattctggagaaatggagaagtttacacaaagtccta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctatctgggcaaggaaagaagtgtattctggagaaatggagaagtttacacaaagtccta 210

                
Query: 665 tattc 669
           |||||
Sbjct: 209 tattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)