BAC Information

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BAC

Clone NameMSMg01-321E08
Chromosome10 (Build37)
Map Location 77,533,888 - 77,534,482
singlet/doubletsinglet
Overlap geneIcosl
Upstream geneCol18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l
Downstream geneD10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321E08.T7 (MSMg01no321_e08.b1)MSMg01-321E08.TJ (MSMg01no321_e08.g1)
ACCAG440283AG440284
length784734
length of high quality
(start - end)
63 (123 - 185)595 (68 - 662)
definitionCHROMAT_FILE: MSMg01no321_e08.b1 PHD_FILE: MSMg01no321_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:58 2005CHROMAT_FILE: MSMg01no321_e08.g1 PHD_FILE: MSMg01no321_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNAA
TTCCTGGATTGCCCGAATGTCTGCAAAGATTGAGTGACTAATCACAACGA
CATTGAAGTGNAGTGGTTACCAGGCTGCAGGTCTAGAGGCTAGTTATTTT
ATGATAGCCTAGTGTCAGCCCCTAAATATCCATTCATTGCCCACTCCANT
GTCAAAACTACGNCTCTGTGACTAGTAGATTAAATAAAANATGTTCGAAT
CTATTAACTTTGCAAACCACTANTGGTATANNNNAGGGTTTTATNNNNTG
TGAACANACACCATGACCTATGTTTATCTTTATAAAAGGACACATTTAAC
TGAGTGCGGGGTGTGGGGGGGGGGGGCGCCGGGGGGGGGGGGGGGGGGGG
GGGGGTGGGGGGGGGCCCCCCCCCCCAAAAAAAAAAAANAACTTGAAAGT
TTGTACTTTCTCTTTTTNAATGCTCTACCGGGAAAATGTACTGCCCGGGC
CCTACCCCCCCCCCCCCCCCCCCCCCCNTTTNNNCTTTTTTTTCAAAAAN
CCCCATGTGCTTAAAAAAGGCCCCCCCTTGGTCCCTTNCCCTTTTNTATT
TANAANNCCTCCCAATTGGTTGTTCGCGTCNNNTTTGTTAAANNNTTTTT
TTTNCCCCCCCAAAAAAAACCTCCCTTTTTTTTTTTAAAACCCTCCTTTT
CCCTCCCCCCCCCTTTTTTTAAAGTGTTCCTTTTTTTTTATTTTTTATTN
TTTTTTNTTTAAATTTATCCCGAGGGGCGGGGGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACCTGCGAAATTCACATTTCTCCTAGGTGTCCCTGTTTTGT
GTCCTTGGGAACCAGGCAGCCTGTTTGGAAGAAGCTCCATGTTTCTAGCG
GGTTCTTTTCTGGTCTTGGTCTGTTCTTGCTGCTGTTGAGCAGCCTCTGT
GCTGGTAAGTTGGGATGCATGCTGTGTGGCGCATAGATGCAGAACATTAG
GGAAGCCCTGGCCACTGCCCCTACAGCCTCCCTAGAGGCCCACTGGAGAA
AGCTGGATCCCCATACCTAGGTTGATATGTAGGGTTGGCGATCAGAAAGG
GAAGTGCTTTTCCAAACTTTATACTTCTCTTTACATTTCTTGCTTGGGGT
CAATGGAATGCCCCCCCCGCTCTCTCTGCATGGTGAATCATAAAAGCCAC
CTTTGAGGAGAGCTAAGGGTGAGAGCCTGCCAAAGCCAGGGAGGGAACCA
ACCTTGGCACTAGGTGGAGGCTCGCACCTCACACCTGAGTTTGCTACAAG
ACACTAACGAGCCCTCCTAATGAACCTTAGTAATGAATTCCTTTCTTGCC
TTGGTGGGCTGAGGCAGGATTGGTGTTTGAATCTTAAGTAAATACATTGT
GTCACTTTGAAGCCTCTGCAGAGACTGAAGTCGGTGCAATGGTGGGCAGC
AATGTGGTGCTCAGCTGCATTGACCCCCACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_e08.g1 MSMg01no321_e08.g1 CHROMAT_FILE:
MSMg01no321_e08.g1 PHD_FILE: MSMg01no321_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:58 2005
         (595 letters)



>mm_chr10_77533688_77534682
          Length = 995

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcacatttctcctaggtgtccctgttttgtgtccttgggaaccaggcagcctgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcacatttctcctaggtgtccctgttttgtgtccttgggaaccaggcagcctgtttg 260

                                                                       
Query: 61  gaagaagctccatgtttctagcgggttcttttctggtcttggtctgttcttgctgctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaagctccatgtttctagcgggttcttttctggtcttggtctgttcttgctgctgtt 320

                                                                       
Query: 121 gagcagcctctgtgctggtaagttgggatgcatgctgtgtggcgcatagatgcagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcagcctctgtgctggtaagttgggatgcatgctgtgtggcgcatagatgcagaacat 380

                                                                       
Query: 181 tagggaagccctggccactgcccctacagcctccctagaggcccactggagaaagctgga 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tagggaagccctggccactgcccctacagcctccccagaggcccactggagaaagctgga 440

                                                                       
Query: 241 tccccatacctaggttgatatgtagggttggcgatcagaaagggaagtgcttttccaaac 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tccccatacctaggttgatatgtagggttggcaatcagaaagggaagtgcttttccaaac 500

                                                                       
Query: 301 tttatacttctctttacatttcttgcttggggtcaatggaatgccccccccgctctctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||
Sbjct: 501 tttatacttctctttacatttcttgcttggggtcaatggaatgcccctcttggtctctct 560

                                                                       
Query: 361 gcatggtgaatcataaaagccacctttgaggagagctaagggtgagagcctgccaaagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatggtgaatcataaaagccacctttgaggagagctaagggtgagagcctgccaaagcc 620

                                                                       
Query: 421 agggagggaaccaaccttggcactaggtggaggctcgcacctcacacctgagtttgctac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggagggaaccaaccttggcactaggtggaggctcgcacctcacacctgagtttgctac 680

                                                                       
Query: 481 aagacactaacgagccctcctaatgaaccttagtaatgaattcctttcttgccttggtgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagacactaacgagccctcctaatgaaccttagtaatgaattcctttcttgccttggtgg 740

                                                                  
Query: 541 gctgaggcaggattggtgtttgaatcttaagtaaatacattgtgtcactttgaag 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgaggcaggattggtgtttgaatcttaagtaaatacattgtgtcactttgaag 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)