BAC Information

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BAC

Clone NameMSMg01-323J23
Chromosome10 (Build37)
Map Location 88,851,750 - 88,852,306
singlet/doubletsinglet
Overlap genenone
Upstream geneGnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323J23.T7 (MSMg01no323_j23.b1)MSMg01-323J23.TJ (MSMg01no323_j23.g1)
ACCAG441993AG441994
length1,2231,293
length of high quality
(start - end)
318 (92 - 409)557 (133 - 689)
definitionCHROMAT_FILE: MSMg01no323_j23.b1 PHD_FILE: MSMg01no323_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:23 2005CHROMAT_FILE: MSMg01no323_j23.g1 PHD_FILE: MSMg01no323_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTCCCNNNNNNNCTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCAGTCGTACAAAGACCTCCGTTAAAATGCCAAAAAAAGAA
AAAGTCTAATTAGATTTCCCGTTACCGACACTGTTTGTTAGTATTGTTTC
TGTCTCCAGTTGTTTTTGGAGAGGGACAACTGTGCTGGTTTGTTTTTGTC
AACTTGACCCAACTCAGAGACACTTAAGACAAGGGAACCTCAATGGAGAG
ATTGCTTCCATTGGCCATGGACACATCTGTTGGGCATTCTCATGATTAGT
GTTTGAAATGGAAGGCGCTAGCCCGCTTCGGGCGATGCTACCCACAGGCA
GGTGGTCCTGGACTGTATCAAAAAGTACACTGAGCAAGCCCATGGAGAGC
AAGCCAGTGATCATCGGAGCAGGGTTCCTCCATGGTTCCTGCATCTGCTC
CTACTTAAGTTCCTGTCCTCAGTTCCCACAGTGATAACCAGCAATGGGGA
TATGTGAGCCAAATAAGCCCTTTCCTCCCAATCTGCTCTTTGTCATAGTG
TTGACCGCAGCAGTAGAAAGCAAGTTAGAGCAGTAGTCTTGGTATCCTAT
ACCTTTTCGTGCCGGGTACTTTAAAAGTTTTAATTTTGCTTCCATGCTTA
CTGCTCCCCCTGTTTCGAGTGGCTTGCCCTCCCATCACATTTATTTCTCA
ATAAGTGTGTCTCTCTCTGTCTCTGTCTCTCTCTGTGNGNATCNGNGATC
TCTGTGTCTCTGNCNGCCTCTGTGTTTCTGTGTCTCCGTCTCCGTCTCCG
TCTCTGTCTCTGTCTCTCTCTCTCTCTGTCGGTGTGTTTAGGAAATGCAC
AAAACTCCATAAACTCTTTTATTCCCTGTGCTGAGGGATTGATTTTATGG
CAGGGGGAAAACACCCACAGTGGGCCACTCACTGACTACCCTGCCTGAAT
TGTCAGGGTTAAAATTAATAACATTGATCCAAAACAAAATTTGAAAACAC
CTTCCTTTGGGTTTCCTCGGAACAAAGATTTTAATGTCAAGGGTCCAAGT
TAATGGATGCCCTATATTTTTGGAAAATTTAATTTTGCAAAAATGAATGG
GTCCTTTTCCCTTACCGGGGAAAAACAAAATTCCTGAAACCTCATTTTTT
CTTGCCCCCCCACCCATCTTATTTTCTCTAATAAAAAAAAAAGCTTGCCC
AATATTTCCCTTTTGAAATTCTT
CCACCCATNNNNAAACCCAGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGACCTAAAAACATGTAA
CTACAAAAATGGNAATCCTATGAAACATTCACAGCCAGCAAAAAATGGAC
ACTGGAACAGCATGCAAAGCAAAGAACCACTCTGTCTGGAGTCTACACCC
AGACGAAGAATGCCTGGCTTGCTTGAGGTTTGTAGGTGTGGAGGTATCCC
CTGTTCACAAAGTTAGGGACAATTTAAAAGAAGAAAAAGATTCCTTTTAA
GCACCACAAAATCCAACCAAACAAAACAAGAAGAACAAAGGAAACGTCTT
TGCACCAAAGCTGAGCAAGGTTATTATTGGAGTTTCCCCGACAATTACTG
AAGGGAGTGGTATAATAAATCCACGAGGAACGGAAGGATGCAATTATCGA
CTGTAAAATAGCAATAATTACTAGCTATAAAAATAGAAATAATAATTGTG
ATTTCCTATTTAAAGCTGTAGGGGAATAAAAGTGTAGATACTAAAGACTT
GAAAAGTGACGGTGGGCACAGTCATGGGGCAAAGAGGTTAACCTCCTGTG
TTACCTGAAACTTGTATTTTGTATTGAAATTTTGAATGTAACCAGGAAAA
CAAGTGAAATAGTGAATGTGAGAGAGAGGGGGGAGGGAGGTAGTAAAGCT
CCCCCCCCCCTCCTCCTCCCCTCCCCTCCCCCCTTTTCTCTCTCTCTCCC
TCCTCCACCCCCCGCTCCTCCCCCCCTCCCCTTCTCTCTCTTTTCCTCCT
CCCTCGCCTTCCCCCTTTTGTCCTCTCTTTCCTCTCTTTCCCTCTTCCCT
CTCTCTCCCCTCCCTTCTCTCTTTCTTCTCCTCCTCTCTCTCTTTCTCTC
TCCGCTCTCTCCTTTCCTCCCCCTTCTTTTTCGCCCTCCCCCTTCTCCCT
CTCCTCCTCTCCCCCTTCCCCCCTTTCCTCTTCCCTCTCCTTCCCTCTCC
CTTCCTCCCTTCTTTCCCTCTCCTTTTCGTTCTCCTCCCCTTTCCCTTTC
CCCCTCCCCTTTTCCCCTCTCCCTCCCTCCGTCCTTCCCCTCCTCTCCCC
CCTTTCTTCTTCTTCCTTTCCTCTCTTGTCCCCCCCTCCCTTCTTCTGCC
TCCTGCTCCCCCTGTCCTCGTCCTCAGGTCCGCGTCCCTCCCCCCCCTTG
CTCCCCCTTTCCCGGCTTCTTCTCCCCTCCGTTTCTCTCCTCTATTTTAC
AAATCACTTCCTACTCCTACCAGACTATACTCCTCACTACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_j23.g1 MSMg01no323_j23.g1 CHROMAT_FILE:
MSMg01no323_j23.g1 PHD_FILE: MSMg01no323_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:23 2005
         (557 letters)



>mm_chr10_88851550_88852506
          Length = 957

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccagcaaaaaatggacactggaacagcatgcaaagcaaagaaccactctgtctggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccagcaaaaaatggacactggaacagcatgcaaagcaaagaaccactctgtctggagt 260

                                                                       
Query: 61  ctacacccagacgaagaatgcctggcttgcttgaggtttgtaggtgtggaggtatcccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacacccagacgaagaatgcctggcttgcttgaggtttgtaggtgtggaggtatcccct 320

                                                                       
Query: 121 gttcacaaagttagggacaatttaaaagaagaaaaagattccttttaagcaccacaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcacaaagttagggacaatttaaaagaagaaaaagattccttttaagcaccacaaaat 380

                                                                       
Query: 181 ccaaccaaacaaaacaagaagaacaaaggaaacgtctttgcaccaaagctgagcaaggtt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ccaaccaaacaaaacaagaagaacaaaggaaacgtctttgcaccgaagctgagcaaggtt 440

                                                                       
Query: 241 attattggagtttccccgacaattactgaagggagtggtataataaatccacgaggaacg 300
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 441 attattggagtttccccgacaattactgaagggagtgggaaaataaatccacgaggaacg 500

                                                                       
Query: 301 gaaggatgcaattatcgactgtaaaatagcaataattactagctataaaaatagaaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggatgcaattatcgactgtaaaatagcaataattactagctataaaaatagaaataa 560

                                                                       
Query: 361 taattgtgatttcctatttaaagctgtaggggaataaaagtgtagatactaaagacttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattgtgatttcctatttaaagctgtaggggaataaaagtgtagatactaaagacttga 620

                                                                       
Query: 421 aaagtgacggtgggcacagtcatggggcaaagaggttaacctcctgtgttacctgaaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtgacggtgggcacagtcatggggcaaagaggttaacctcctgtgttacctgaaact 680

                                                                       
Query: 481 tgtattttgtattgaaattttgaatgtaaccaggaaaacaagtgaaatagtgaatgtgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 tgtattttgtattgaaattttgaatgtaaccaggaaaacaagtgaaatagtgaatgtaag 740

                            
Query: 541 agagaggggggagggag 557
           |||||||||||||||||
Sbjct: 741 agagaggggggagggag 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)