BAC Information

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BAC

Clone NameMSMg01-324E16
Chromosome10 (Build37)
Map Location 36,800,155 - 36,800,561
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667860, Hs3st5, Hdac2
Downstream geneMarcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324E16.T7 (MSMg01no324_e16.b1)MSMg01-324E16.TJ (MSMg01no324_e16.g1)
ACCAG442484AG442485
length7281,310
length of high quality
(start - end)
693 (36 - 728)---
definitionCHROMAT_FILE: MSMg01no324_e16.b1 PHD_FILE: MSMg01no324_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:34 2005CHROMAT_FILE: MSMg01no324_e16.g1 PHD_FILE: MSMg01no324_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAATAGAGGAGAAAGTGGGGAAAAGCC
TTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCT
TGTGCTGTAAGATCGAGAATTAGTCAGGGTTTCTATTCCTACACAAACAT
CATGACCAAGAAGCAACTTGGGGAGGAAAGAGTTTATTCAGCTTGCACTT
CCACATTGCTGTTCATAACTTAAGGAAGTCAGGACTGGAACTCAAGCAGG
TCAGAAAGCAGGAGCTGATGCAGAAGCCATGGAGGGATGTTTCTTAGTGG
CTTGCTCAAGATCAAACGTAACACTTTCAATAATACAATTTTTGGAAAGA
GTTGAAGCTTTGTACCCTTTTTATTATTATTATTTGTGGGTGTCTTTTTT
TCTCTTTTGTCCTAAGAGTATAACCCACATATAGGCCCTTTAGTCAATTC
TCATTTTCCTTATTTATTTATTTCATTAGATATTCTTGTTTTATTATTTA
TGCTGTTTTTTGTTTTTGAGTAAGAGCN
GTTTCTCTTTTCGATCTTATATTNNGCTGTGGGCAAACGGTTGTACTTTA
CTAGGCGGTATATAGGTTATAGGGTGTATACCACTCAACAATAGTATGAG
GCCAACAACGACCACTCTCCTAAACGAAAGCTGGTGTCGGTGGTGTGAGA
AGCGGATACATTAGGGATGACGGCCCCCTTCCTTATGCTGACCCGTACTG
CGCGGCGAAGGAGGAGGAGGCGCCGGCCAAGAACCTGGTACGACATAGCT
CTCCGAATATAGCCACCTCGCTCACGATAAAGAAAGATCCGAGATAAATA
TATACGGCCGCCGACGAGGTATAGTACACGCACGTGTTGGCTGCAACCAC
GTCTATTTATCCGCGTATGGCGGGTAGTGGCTGTCTCTGCCTCTGTTGTC
TTCGCTGTTTTGGCGTATGGGTTGCGGCCGGGCGACGGGGCGCGGCGGAC
GGTGAACGAAAACGCAATACCCGACGGTCGGGCCCAGTTATTGCGCGATA
CTCGACTTGCCATTGATCCTGGTACCGAAGCGACGCCTTTATCGTTCACG
AGCGCACCAGGGGTGTACCGGCGGCCGCGAGCGGGTGAGTATACAGAGGC
GGCTATTGAAGCGCGGAGCGACTGATCGCCGGCGTGTTGCACCGATTCGC
TACTCGTTGATGTATTCAGTGACCAGTAGTTGCGCGCGCACGCCGGTGAC
AGCTGTCCGCACCCGCCGCCGCGGCGCGGTGTGGTGATGTACACGCGCGC
GGTCTGTATCCACGTAAGTACCGACGTCGGTGTAGCGCGGCGTTGGCTGT
ACGCACGGCGGTCTTAGCCGCTTATGGTGTCCGCCGGCGGCGTGCCACCG
CCTTTTTAGACGCGCGGAGTAGGAGTGAGAGTGTGTTCGCGTGATAGTGC
GCGAACCACTCAGCGACACGACATACGTAAGCGTGTTTGATGGTCCTATG
GTACAACTCTCACGATGACTGAGCATATTGCGGCGGTAGAACATGCAACG
CCGTCTTGTGTGTTATTCACCACGACGTAAATCGCAATGTCTCGGGTTAT
CACACCTCCACATTTCTTATAATACCCATCCATACCTGCATTCACATCAA
TTTTAGCGCTCGCGGCCGCGCGTGTTATCTGCGTATGTCTGCACGGTGCT
GGCGACGGGCGATGGGCTTCGGTATCATCGCGCTGTCCTGTTGTTGTCGT
CCCGCAGTGTGCGGACGCGGCAGGAGCATAATAACGCGGACAATAGTGTA
TAAGTGTCCGCGTCGTATAGCGCGTATGTCGTCATAGTATGNCGCACGAG
AGATCACGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_e16.b1 MSMg01no324_e16.b1 CHROMAT_FILE:
MSMg01no324_e16.b1 PHD_FILE: MSMg01no324_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:34 2005
         (693 letters)



>mm_chr10_36799484_36800576
          Length = 1093

 Score =  733 bits (379), Expect = 0.0
 Identities = 400/407 (98%)
 Strand = Plus / Minus

                                                                        
Query: 285  ttagtcagggtttctattcctacacaaacatcatgaccaagaagcaacttggggaggaaa 344
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 ttagtcagggtttctattcttacacaaacatcatgaccaagaagcaacttggggaggaaa 1019

                                                                        
Query: 345  gagtttattcagcttgcacttccacattgctgttcataacttaaggaagtcaggactgga 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gagtttattcagcttgcacttccacattgctgttcataacttaaggaagtcaggactgga 959

                                                                        
Query: 405  actcaagcaggtcagaaagcaggagctgatgcagaagccatggagggatgtttcttagtg 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  actcaagcaggtcagaaagcaggagctgatgcagaagccatggagggatgtttcttagtg 899

                                                                        
Query: 465  gcttgctcaagatcaaacgtaacactttcaataatacaatttttggaaagagttgaagct 524
            ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 898  gcttgctcaagatcaaaagtaacactttcattaatacaatttttggaaagagttgaagct 839

                                                                        
Query: 525  ttgtaccctttttattattattatttgtgggtgtctttttttctcttttgtcctaagagt 584
            |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 838  ttgtaccctttttattattattatttgtgggtgtctttttttcttttttgttctaagagt 779

                                                                        
Query: 585  ataacccacatataggccctttagtcaattctcattttccttatttatttatttcattag 644
            ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 778  ataacccacgtataggccctttagtcaattctcattttccttatttacttatttcattag 719

                                                           
Query: 645  atattcttgttttattatttatgctgttttttgtttttgagtaagag 691
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  atattcttgttttattatttatgctgttttttgtttttgagtaagag 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)