BAC Information

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BAC

Clone NameMSMg01-326D07
Chromosome10 (Build37)
Map Location 65,419,913 - 65,420,377
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326D07.T7 (MSMg01no326_d07.b1)MSMg01-326D07.TJ (MSMg01no326_d07.g1)
ACCAG443891AG443892
length697691
length of high quality
(start - end)
497 (46 - 542)512 (57 - 568)
definitionCHROMAT_FILE: MSMg01no326_d07.b1 PHD_FILE: MSMg01no326_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:52 2005CHROMAT_FILE: MSMg01no326_d07.g1 PHD_FILE: MSMg01no326_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTTCGAGAGGATCCGCGGAATTCATTGGCATCACCGGAAAATT
TCCTAAACAGAACTCCAATGGCCCATACTATAAGATCAAGAATTGATAAA
TGGAACTTCATGAAACTGAAAAGCTTCTGTAAGACAAAGGATACAGCCAA
TAAAACAAATTGGCAATGTACAGACTGGGAAAAACTAACCCCACATTCAA
CAGAGGGCTAGTTTCCAAAAATATGAAGAACTTAAGAAGCTGATGACCAA
GAAACCAAACAACCCAATCAAAAACTGGGTTATAGAACTAAAATTCACAA
TAGAGGAATACAGAATGGCTGAGAAACACTTAAAGAAATGTTCAAAGTCC
TTAGTCATCAGGGAAATGTAAATCAAAAGGACCCTGAAATTCTACCCCAC
TGCAATCTGAATGACAAAGATCAAAAATTCAGGTGACAGCATGTGCTGGC
AAGCATGTGAAGAAAGAGAAACACTCCTCCATTGCTGGTGGGATTGTAAA
CTGGTAAAACAACTCTGGAAATAAATCTGGAGATTCCTCAAAAAAAATGC
GAAAGGTTGGGTAGGGGAGTGTCGTCCGCGAGGCTGTATCCTCTTTTTTT
CCTTCTTCTCCTCACCCATCCCTCCATTCTCTTATTTCCTTCCCCCCCCC
TCCTCATTCCTATCCCTCATCCTTCCTACTTTTCCCTCTTACAACAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCCATGGCTCCAGCTATGTACGTAGCAGAGGATTGCCTTATCT
GGCTGGCATCAATAGGAGGGGAGGACTTTGGTCCTGTGGAGGCTTGATGA
CCTAGCATAGGAGGATGCTAGAGTGGTGGATGGGAGAGCACCCTTTTAGA
GACAAAGGGGAAGGAGATGGAATGGGGGATTTCCAGGGGGGAAGACCTGG
CAGGGAGACGACATTTGAAATGTAAATAAATAAACTAACAAATAAAAAAA
TAATATGGTACTATGCAAAAGGCCTTGTCAAAAGTGCCATTGTCACTAAT
GATATGGGTGCTACTGTGCCTCTGCTCCAGTCAGTATCTTCTGATCTACA
ACTAACAACTTATTCTAGCTCTGACTGGAGAGGAAAGTCATACTACCTAG
CTTCTGTTTCCACTTTATAAAAAAAGAAGTTCAATAGATTTAGAGTAAAA
TACCTATAGTTGGTTATGAAGTGGACATGCTATATTTTATCCCATGGATG
ACCTGCATGTATGAAGGTCAATGGCCTAGACATACAGAGAGTAGTGTTAC
TGATTTTGTGTTCCAAATTATTTTCTATGATAAGGAGCATCTGGTCTTGT
TACTGAACAGTGAAGTGTGGAGAATGAATGGCCTTAGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_d07.g1 MSMg01no326_d07.g1 CHROMAT_FILE:
MSMg01no326_d07.g1 PHD_FILE: MSMg01no326_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:52 2005
         (512 letters)



>mm_chr10_65419466_65420377
          Length = 912

 Score =  837 bits (433), Expect = 0.0
 Identities = 457/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 48  tggcatcaataggaggggaggactttggtcctgtggaggcttgatgacctagcataggag 107
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 912 tggcatcaatgggaggggaggacattggtcctgtggaggcttgatgacctagcataggag 853

                                                                       
Query: 108 gatgctagagtggtggatgggagagcacccttttagagacaaaggggaaggagatggaat 167
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gatgctagagtggtgggtgggagagcacccttttagagacaaaggggaaggagatggaat 793

                                                                       
Query: 168 gggggatttccaggggggaagacctggcagggagacgacatttgaaatgtaaataaataa 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gggggatttccaggggggaagacctggcagggagacgacatttgaaatgtaaataaataa 733

                                                                       
Query: 228 actaacaaataaaaaaataatatggtactatgcaaaaggccttgtcaaaagtgccattgt 287
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 732 actaaaaaataaaaaaataatatggtactatgcaaaaggccttgtcaaaagtgccatggt 673

                                                                       
Query: 288 cactaatgatatgggtgctactgtgcctctgctccagtcagtatcttctgatctacaact 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 672 cactaatgatatgggtgctactgtgcctctgctccagtcagtatcttctgatctagaact 613

                                                                       
Query: 348 aacaacttattctagctctgactggagaggaaagtcatactacctagcttctgtttccac 407
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aacaacttattctagttctgactggagaggaaagtcatactacctagcttctgtttccac 553

                                                                       
Query: 408 tttataaaaaaagaagttcaatagatttagagtaaaatacctatagttggttatgaagtg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttataaaaaaagaagttcaatagatttagagtaaaatacctatagttggttatgaagtg 493

                                                        
Query: 468 gacatgctatattttatcccatggatgacctgcatgtatgaaggt 512
           ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 492 gacatgctatattttatcctatggatgacctgcatgtatgaaggt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)