BAC Information

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BAC

Clone NameMSMg01-326G04
Chromosome10 (Build37)
Map Location 115,294,609 - 115,295,232
singlet/doubletsinglet
Overlap genenone
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
Downstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326G04.T7 (MSMg01no326_g04.b1)MSMg01-326G04.TJ (MSMg01no326_g04.g1)
ACCAG444024AG444025
length736718
length of high quality
(start - end)
626 (45 - 670)346 (78 - 423)
definitionCHROMAT_FILE: MSMg01no326_g04.b1 PHD_FILE: MSMg01no326_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:05 2005CHROMAT_FILE: MSMg01no326_g04.g1 PHD_FILE: MSMg01no326_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCCCTTCACCGGCCATTTCTGGCACCCCCATCCTTCTTCCTTCA
TACTGTTTGAAGCCTGCACAATACAAAGACAATTTGTATGAAGCCACCTT
CTCTGGCTTGGGTAACTGTTCCCCTCAATGGCCCATATGCTAAAGACCTA
GTCACCAGCCTGTGGGAGGTAGTGGGACCTTTAAGAAGTAGGGCCTCATG
GGAGATCTTCTGATCATTAGGGATATATAGTCAGAGGGGACTGTAAGTGC
CAATGTCTTTCTTTCTCTCTCTCTCCACCATGAAGGAATCAGGCTCAATT
GTCTCAATATTTCTCAAATTATTTTTCAATATTGAAAACAGTAATCAGTT
TTGTTACAGTACCACAACGCTAACTTGCTGCTGTCACTATAGGTGATCAC
AAAACAGGTTCTTGTGGATAAAAACAGCAACAAACAGCATTCAGTTTGTC
AAAGTCAAATGTAGGATTTGGGGTAATGGGTAGAAATATTCTTGACATAA
TATAAAATTTTAGCAACCAACAAAGGAGCCATGCCTACACACTGAAGACC
ACATACAATGAATAGAATCTGAGAGCTGTGCCTTTGGCTGACAAATTCTG
TTTACTTCCCAATTTTCAAGTATCTGCCAGATCTTGACATGAGGCAAATA
ATCCAAGAGGTATGATGGCCTCCGTGTGGGAAAAGG
TTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAAGTG
AGGTGACACTATAGAATTTCACGAGGAATTCTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGTGGTTCCTCATAAAACTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAG
GTAAGAAGGACACATGCTCCTCCACCCTCATAGCAGTCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTATAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACT
GATAACGGGATATTAGCCCCAAACCTATGATACCCAAGATATAAGACATA
ATTTGCTAAACCCTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_g04.b1 MSMg01no326_g04.b1 CHROMAT_FILE:
MSMg01no326_g04.b1 PHD_FILE: MSMg01no326_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:05 2005
         (626 letters)



>mm_chr10_115294405_115295432
          Length = 1028

 Score = 1164 bits (602), Expect = 0.0
 Identities = 618/624 (99%), Gaps = 2/624 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcccttcaccggccatttctggcacccccatccttcttccttcatactgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcccttcaccggccatttctggcacccccatccttcttccttcatactgttt 264

                                                                       
Query: 65  gaagcctgcacaatacaaagacaatttgtatgaagccaccttctctggcttgggtaactg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagcctgcacaatacaaagacaatttgtatgaagccaccttctctggcttgggtaactg 324

                                                                       
Query: 125 ttcccctcaatggcccatatgctaaagacctagtcaccagcctgtgggaggtagtgggac 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccccccaatggcccatatgctaaagacctagtcaccagcctgtgggaggtagtgggac 384

                                                                       
Query: 185 ctttaagaagtagggcctcatgggagatcttctgatcattagggatatatagtcagaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttaagaagtagggcctcatgggagatcttctgatcattagggatatatagtcagaggg 444

                                                                       
Query: 245 gactgtaagtgccaatgtctttctttctctct--ctctccaccatgaaggaatcaggctc 302
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 445 gactgtaagtgccaatgtctttctttctctctcactctccaccatgaaggaatcaggctc 504

                                                                       
Query: 303 aattgtctcaatatttctcaaattatttttcaatattgaaaacagtaatcagttttgtta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattgtctcaatatttctcaaattatttttcaatattgaaaacagtaatcagttttgtta 564

                                                                       
Query: 363 cagtaccacaacgctaacttgctgctgtcactataggtgatcacaaaacaggttcttgtg 422
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagtaccagaaggctaacttgctgctgtcactataggtgatcacaaaacaggttcttgtg 624

                                                                       
Query: 423 gataaaaacagcaacaaacagcattcagtttgtcaaagtcaaatgtaggatttggggtaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gataaaaacagcaacaaacagcattcagtttgtcaaagtcaaatgtaggatttggggtaa 684

                                                                       
Query: 483 tgggtagaaatattcttgacataatataaaattttagcaaccaacaaaggagccatgcct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgggtagaaatattcttgacataatataaaattttagcaaccaacaaaggagccatgcct 744

                                                                       
Query: 543 acacactgaagaccacatacaatgaatagaatctgagagctgtgcctttggctgacaaat 602
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acacactgaagaccacataaaatgaatagaatctgagagctgtgcctttggctgacaaat 804

                                   
Query: 603 tctgtttacttcccaattttcaag 626
           ||||||||||||||||||||||||
Sbjct: 805 tctgtttacttcccaattttcaag 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1028
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1018
Effective search space:   627088
Effective search space used:   627088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)