BAC Information

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BAC

Clone NameMSMg01-330L08
Chromosome10 (Build37)
Map Location 50,526,272 - 50,526,515
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneLOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L08.T7 (MSMg01no330_l08.b1)MSMg01-330L08.TJ (MSMg01no330_l08.g1)
ACCAG447191AG447192
length732762
length of high quality
(start - end)
234 (130 - 363)244 (130 - 373)
definitionCHROMAT_FILE: MSMg01no330_l08.b1 PHD_FILE: MSMg01no330_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:28 2005CHROMAT_FILE: MSMg01no330_l08.g1 PHD_FILE: MSMg01no330_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATTCATATGCAGATACAGCATATCCAAACTTATTGGACAGG
ATGAATACAGTGCCAAGAGAATATTCCTAACACTAAAGTGCCATGGCAAA
GAAATTGGAGAGATCCTAGAGATCTTACACTAACAACTTAACAGCACACC
TGAACCCTAGAACAGAAGACACAAACACATGAAACACATGGAAGCAGAGT
AGAAGGCAGGAAATAACCAAACTCAGGGCCAAAATCAACCAAACACAAAG
AAAGAGAACGATAACAAAGAGTCAACAAAACCAAAGCCTGGTTTTTTGGT
CCTTTATCAACAGGATAAATAACCTCCCCCCACCCTAACTAAAGGGCACA
GAGATTGTATCCAAATTAACAAAATCAGAAATAAAAAGAGAGACTTAGCA
ACAGAAAATGAGGAAATTCAAGAAATCATCAGATCCTACTACAAAAGCCT
ATACTCAACACAACTGGAAAGTCTAGATGAAATGGATGGTTTTCTAGACA
GATACCACATACCAAAGTTAAATCAAGATCAGGCAAACTATGTAAACAGT
CCCATATCACCAAAGGTAATCAATAAAATCCTCTCAACCAAAAAAAAAAA
AAGCTCAGGATCAGATGGATGTAGCATAGAATTTCTAACAGACCAACAGA
CCATCAAATACAAGCTAATATCAACACTCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTAATTTAAACATTGAGCAGA
AAAAGAAAAGTTCTTTGGAATCTGGGCCCTCAAAAGTAGAGTGCTTGTTT
ATGAATCTGGTTTTACAACCTAGTATTGCCTCAACCTTGAAAAGTCAACC
AAGGAAAAATAGCTTTAGGTGATAAAACCTTTTTAATATTGATAAGTTTT
AATTGCAGAAATCAAGGTTTTGTAAATATTTATAAGCCAAGTAACTCCTT
TGAAGATCTGAAAAAATGTTGTCTATATCAAATTGATAATCAAAATATCT
GTTTTACCTAAGAGTTTATTTACTAACCAGATAGGGGCAGTCGTTTCAGG
CCTATGCTGTTATCAAACATATGTATAGGCATTACTTATGTTTGAAACAT
AGTGGTAATGTTGTCTTCTAAAGATATGAATCAGTACCCTCTTTTAAGTT
TGTACCCAATCTCAGCTATGTTAAGTTCTTTTGGTTGGTTGGATGGTTGG
TTTTTTGTTTTTTACTTTTTTTCGACTAGAAATTCTATTAATTTTTAATA
TACTTTTCATCTTTCTATTTCATCTTATTTTTTATTCATAAAATTTTCAT
ATATATTTTCTGCTCAATTCTACACACACTACTAAACACTTTATAATATC
TTACATGAATTGATCTCATAAGCACTCCTTTTTTTTCCAATTTTTTTTCA
TATACATTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l08.g1 MSMg01no330_l08.g1 CHROMAT_FILE:
MSMg01no330_l08.g1 PHD_FILE: MSMg01no330_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:29 2005
         (244 letters)



>mm_chr10_50526072_50526715
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaagtagagtgcttgtttatgaatctggttttacaacctagtattgcctcaaccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaagtagagtgcttgtttatgaatctggttttacaacctagtattgcctcaaccttg 260

                                                                       
Query: 61  aaaagtcaaccaaggaaaaatagctttaggtgataaaacctttttaatattgataagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtcaaccaaggaaaaatagctttaggtgataaaacctttttaatattgataagttt 320

                                                                       
Query: 121 taattgcagaaatcaaggttttgtaaatatttataagccaagtaactcctttgaagatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattgcagaaatcaaggttttgtaaatatttataagccaagtaactcctttgaagatct 380

                                                                       
Query: 181 gaaaaaatgttgtctatatcaaattgataatcaaaatatctgttttacctaagagtttat 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagaaatgttgtctatatcaaattgataatcaaaatatctgttttacctaagagtttat 440

               
Query: 241 ttac 244
           ||||
Sbjct: 441 ttac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)