BAC Information

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BAC

Clone NameMSMg01-331A04
Chromosome10 (Build37)
Map Location 74,781,785 - 74,782,153
singlet/doubletsinglet
Overlap geneAdora2a
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670
Downstream geneEG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331A04.T7 (MSMg01no331_a04.b1)MSMg01-331A04.TJ (MSMg01no331_a04.g1)
ACCAG447418AG447419
length735738
length of high quality
(start - end)
372 (46 - 417)635 (75 - 709)
definitionCHROMAT_FILE: MSMg01no331_a04.b1 PHD_FILE: MSMg01no331_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:51 2005CHROMAT_FILE: MSMg01no331_a04.g1 PHD_FILE: MSMg01no331_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAA
TTCAGCAGCTCTTCCCTCTAACCTGCTCCTTCCTGAGCTACCCCTCTCCC
TCGAAGAAGCTAGAGCTCAATGGCCTTTTGGTAGCCCTGAGTAGTATGTG
CACAGGAGAGTGGAGGGCGAGACAGATGGTCAGGTAGACAGATGGACACA
GGTAGGAAGTTTTGGTGAATGTGATGGTGTAGTTGAAGAGGTGAGGATCT
TGCTACAGGCAAGCACTGAACTGGTAAAAGAGACTTTCTCCAACTGCCAG
GGAAGAATCTGGGCTGTGGGACACACTGGGGACCCGGCAGGGTAGATGAT
CAGGACCTGGGGAACTCAGTGGAGGAAAGTAGTCTGTAGGTGGGAGGCAG
CAGAGGTGACAGAACCTGACAATAGGACCAAGGTCCACACTGGGACCCCG
ATTGTAGGAGGAGATTAGAGGTACAGAGAGGAGCCCTTGGAGACTGTTCA
TGCCCAGAGCAAGACCCGGACCCTGAGATAAGGAAGAAGGAGCCATGTGG
TGCAGAGAGGGAGGTCCCGGCCCTGAGATCCTGTCAGGTGTCAAGCAGGG
ATGGGATGGGGGAGAGAAGCTGCCCTTAGTCCAGGTCTGGGAAGGCCCTG
GACCCTACGAAGACAGGACTTGCGCTGTTTCCCAGGGCTTACTCTAACTT
AATGTGCCATGACTCTGTTTCGAGGCTCTAGCTGC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCAGCAACAGAAACAACATAAAGCC
TACAATCTCATGGAAACTGAACAACTCTCTGCTAAAAGACTATTAGGTGA
GGGATACGAGTGAACAGAAAGGTCGCAGCATTTGGCGAACGCATGGTTTA
CTGATGGTTCATCATCCACTGACGGAACCAAAACTAATGGAAAATGGCAA
CCTATTGACAGGGGGATGGAATGGCTGAGACTGAGGAAGGACCCACAAAA
TCAGTGTGGCACTATTGGCTATTAACACAAACAACCACTACAAAAGCAAA
AAGAAAGTATCTTCTCCAAATTCATACTGTATGTGCAAAGGTATAGCTAT
ATGGTCATCATGGAAACTGCCACCAACTGACAGAAAAATGGCAAAGATAT
CTGGTCCTGGGAGGAATAAATGGAAATGGTAAAACCTAGCAAACGTAGGG
AAGACATCACATTTATATAGTTCATACAGGCAAGACAGACAAAATGTCTG
AAAATAATGAAATAGTGGATGAATTGGTATCTTTAATTAAGACTAGAATA
TTGAAATTTGCCAGGGAACAAACTCAGAATAAATCAGCAAGAATGATAGA
TCACCCATTCAAAAAACTTGAACATTTATCCTCCTAACACTAAAAAAAAT
AAGGGGAAATGGAGAACCAGATTTAACCAGTATAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_a04.b1 MSMg01no331_a04.b1 CHROMAT_FILE:
MSMg01no331_a04.b1 PHD_FILE: MSMg01no331_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:51 2005
         (372 letters)



>mm_chr10_74781581_74782353
          Length = 773

 Score =  644 bits (333), Expect = 0.0
 Identities = 360/369 (97%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   attcagcagctcttccctctaacctgctccttcctgagctacccc-tctccctcgaagaa 63
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 attcagcagctcttgcctctaacctgctccttcctgagctaccccctctccctcgaagaa 264

                                                                       
Query: 64  gctagagctcaatggccttttggtagccctgagtagtatgtgcacaggagagtggagggc 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 gctagagctcaatggccttttggtagccctgagtagtatgtgcataggagagtggagggc 324

                                                                       
Query: 124 gagacagatggtcaggtagacagatggacacaggtaggaagttttggtgaatgtgatggt 183
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 gagacagatggtcagatagacagatggacaccggtaggaagttttggtgaatgtgatggt 384

                                                                       
Query: 184 gtagttgaagaggtgaggatcttgctacaggcaagcactgaactggtaaaagagactttc 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 gtagttgaagaggtgaggatcttgctacaggcaagtactgaactggtaaaagagactttc 444

                                                                       
Query: 244 tccaactgccagggaagaatctgggctgtgggacacactggggacccggcagggtagatg 303
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tccaagtgccagggaagaatctggtctgtgggacacactggggacccggcagggtagatg 504

                                                                       
Query: 304 atcaggacctggggaactcagtggaggaaagtagtctgtaggtgggaggcagcagaggtg 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 atcaggacctggggaactcagtggaggaaagtagtctgtaggtgggtggcagcagaggtg 564

                    
Query: 364 acagaacct 372
           |||||||||
Sbjct: 565 acagaacct 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)