Query= MSMg01no333_k03.b1 MSMg01no333_k03.b1 CHROMAT_FILE:
MSMg01no333_k03.b1 PHD_FILE: MSMg01no333_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:51 2005
(683 letters)
>mm_chr10_17028532_17029612
Length = 1081
Score = 1236 bits (639), Expect = 0.0
Identities = 669/679 (98%), Gaps = 2/679 (0%)
Strand = Plus / Plus
Query: 5 gaattctctaaggacccatcttgtattctcacaatggcaaccaaactcacgctatgaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaggacccatcttgtattctcacaatggcaaccaaactcacgctatgaaga 264
Query: 65 ttttaggagaggacataatattcagtctatagcaaggatcctcaaagatcccaggtaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttaggagaggacataatattcagtctatagcaaggatcctcaaagatcccaggtaaag 324
Query: 125 ctttgtgaactatcactctgagctcttatttattttatgattttcttcatccaattctac 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttgtggactatcactctgagctcttatttattttatgattttcttcatccaattctac 384
Query: 185 acatttcaatctcaaatttcaagaaatctatgtgtatctcatttgtatttttgttatttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatttcaatctcaaatttcaagaaatctatgtgtatctcatttgtatttttgttatttc 444
Query: 245 cttagtcacaacataaaagcagaggaagtatcttcctggagtggcattctcattatgaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttagtcacaacataaaagcagaggaagtatcttcctggagtggcattctcattatgaat 504
Query: 305 caatgttgttagcataagatattttgtcatttaagcagtcctaggtaaaaaataactcag 364
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatgtt-ttagcagaagatattttgtcatttaagcagtcctaggtaaaaaataactcag 563
Query: 365 tattacaagaacatgcattaccctgaagaaacccccacccccttagtggaaaaggcatcc 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattacaagaacatgtattaccctgaagaaacccccacccccttagtggaaaaggcatcc 623
Query: 425 ttttacattgcttggcataattccatagtagctcccaagataatattctatattgtctga 484
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 ttttacattgcttggcataattccatagtagctcccaagataatattccatattgtctga 683
Query: 485 taagcccaccttacatgaaatatttgggaaaaaataacttgattttcagtgtgttattaa 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 taagcccaccttacatgaaatatttgggaaaaa-taacttgattttcagtgtgttattaa 742
Query: 545 ttattaaatagcctccaatctcctggtatctttctccctcaccaggaatattatcatatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttattaaatagcctccaatctcctggtatctttctccctcaccaggaatattatcatatg 802
Query: 605 tcgctgtggtttctggaaaacaaaaatcctcactgggcctgatggtggtgacacgtgcct 664
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 803 tcactgtggtttctggaaaacaaaaatcctcactgggcctgatgctggtgacacgtgcct 862
Query: 665 ttaattacaacactaagaa 683
|||||||||||||||||||
Sbjct: 863 ttaattacaacactaagaa 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1081
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1071
Effective search space: 720783
Effective search space used: 720783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_k03.g1 MSMg01no333_k03.g1 CHROMAT_FILE:
MSMg01no333_k03.g1 PHD_FILE: MSMg01no333_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:51 2005
(643 letters)
>mm_chr10_17207066_17208114
Length = 1049
Score = 1145 bits (592), Expect = 0.0
Identities = 633/650 (97%), Gaps = 8/650 (1%)
Strand = Plus / Minus
Query: 1 tcagctgctactctgtcactatgtctgcctgtacatcaccatgcttcctgctttgaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 tcagctgctactctgtcactatgtctgcctgtacatcaccatgcttcctgctttgaggct 960
Query: 61 aatggactgaacctctgaaactgtaacccagcccaatgaaataatttcatgtataacagt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 aatggaccgaacctctgaaactgtaacccagcccaatgaaataatttcatgtataacagt 900
Query: 121 tggcctggtcatgctgtctcttcacagcaatggaaactctaactaagacacagggactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tggcctggtcatgctgtctcttcacagcaatggaaactctaactaagacacagggactca 840
Query: 181 catttaagctcttggctgagctgagttctaatctggggtttttaacaagctcatttaact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 839 catttaagctcttggctgagctgagttctaatctggggtttttaacaagctcatttaatt 780
Query: 241 tcatgcagttgtagagactttatgttcctagattctccttttttttttctttgtt----- 295
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 779 tcatgcagttgtagagactttatgttcctagattctcc-tttttttttctttgttttgtt 721
Query: 296 -ttgttgttgttgttgtctgaaagatgtgttctaagcccctacaagtcacatgcccaccc 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 720 gttgttgttgttgttgtctgaaagatgtgttctaagcccctacaagtcacatgcctaggt 661
Query: 355 cttcctcatctgactgtctttaaagtcagaaatctcccttgccttatacacaagtattct 414
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cttcctcatctgactgtcttcaaagtcagaaatctcccttgccttatacacaagtattct 601
Query: 415 cgtacttgaggatatttccaccaagagaagttagccttcactgactaagtaaggtgaggc 474
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 600 cgtacttgaggatatttccaccaagagaacttagccttcactgactaagtaaggtgaggc 541
Query: 475 tagatgagacctgggactcagttataggtatattgcctat-gtactctgttgtgtgtaat 533
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 540 tagatgagacctgggactcagttataggtatattgcctatagtactctgttgtgtgtaat 481
Query: 534 tttaaaatgctgccgccttagcccaggagctgccccagtgctaccagctcacccccaccc 593
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttaaaatgttgccgccttagcccaggagctgccccagtgctaccagctcacccccaccc 421
Query: 594 cctccttttccttttgttccacactgcttagctccaggattgtctaccac 643
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctccttttccttttgttccacactgcttagctccaggattgtctaccac 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1049
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1039
Effective search space: 657687
Effective search space used: 657687
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
