Query= MSMg01no333_n15.b1 MSMg01no333_n15.b1 CHROMAT_FILE:
MSMg01no333_n15.b1 PHD_FILE: MSMg01no333_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:07 2005
(614 letters)
>mm_chr10_101824364_101825373
Length = 1010
Score = 1091 bits (564), Expect = 0.0
Identities = 602/616 (97%), Gaps = 8/616 (1%)
Strand = Plus / Minus
Query: 1 cacatgtatttgcagaactgtatggaaattatgagcaaaagtatctcctaaagctagaaa 60
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct: 810 cacatgtatttgcagaactgtatggaaatt-tgagcaaaagtatctactaaagctataaa 752
Query: 61 aatccctaaattcttttaaattttatggaaatttctcacatgaatggcccatatttaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aatccctaaattcttttaaattttatggaaatttctcacatgaatggcccatatttaaga 692
Query: 121 acttcataatgcatcccttttaaaatcttcttgtgactca-atcaactgacaattatatg 179
||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct: 691 acttcataatgcatcccttttaaaa---tcttgtgactcaga-caactgacaattatatg 636
Query: 180 tttattttttttatgaaaaagaataaagggattaatgaatatttagtaagttctgaaagg 239
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 635 ttta-tttttttatgaaaaagaataaagggattaatgaatatttagttagttctgaaagg 577
Query: 240 gttttaaggctgcttcagttttacccaaagatttatgcaacccttattactgtattttga 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gttttaaggctgcttcagtttcacccaaagatttatgcaacccttattactgtattttga 517
Query: 300 gtcatcatatgttcatgcctccttcaaacactagaactaatccactattaacaagaaccc 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 516 gtcatcatatgttcatgcctccttcaaacactagaactaatccattattaacaagaaccc 457
Query: 360 atctgagcaaggattgtattcctttggcttaccccgtgctcctgggttctacggtgtttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atctgagcaaggattgtattcctttggcttaccccgtgctcctgggttctacggtgtttc 397
Query: 420 tataattatgattagtgtttcactat-atctatcatatagagagctacatgtatggacat 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 396 tataattatgattagtgtttcactataatctatcatatagagagctacatgtatggacat 337
Query: 479 ttttgatcagttttttaagagatgtatcctgtttgcaaaggcacaataaaattgcatctt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttttgatcagttttttaagagatgtatcctgtttgcaaaggcacaataaaattgcatctt 277
Query: 539 ctagattataggcaataaagataacaataaaccgtatttaacaaatcatactgatactct 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 276 ctagattataggcaataaagataacaataaaccatatttaacaaatcatactgatactct 217
Query: 599 ctgctaatttgatttg 614
||||||||||||||||
Sbjct: 216 ctgctaatttgatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1010
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1000
Effective search space: 604000
Effective search space used: 604000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_n15.g1 MSMg01no333_n15.g1 CHROMAT_FILE:
MSMg01no333_n15.g1 PHD_FILE: MSMg01no333_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:07 2005
(596 letters)
>mm_chr10_101675218_101676214
Length = 997
Score = 1006 bits (520), Expect = 0.0
Identities = 583/610 (95%), Gaps = 15/610 (2%)
Strand = Plus / Plus
Query: 1 tggactttccaggtcgaaaaagtgagaccctatctcagagatgagtcaacaaataaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggactttccaggtcgaaaaagtgagaccctatctcagagatgagtcaacaaataaaaat 260
Query: 61 acaaatgtaaatatagaatttctagtgaatatatgtaactacataaatattatcttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaatgtaaatatagaatttctagtgaatatatgtaactacataaatattatcttcatt 320
Query: 121 cagggag-aaagaaactgaaataatatgtttttc-tttttattgattattttatttattt 178
||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 321 cagggagaaaataaactgaaagaatatgtttttcttttttattgattattttatttattt 380
Query: 179 atatttcaaatgttatccccttcccagt-cccccaccccataagcctcctactccc-tcc 236
| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||
Sbjct: 381 acatttcaaatgttatccccttcccagtcccccccccccataagcctcctac-cccttcc 439
Query: 237 tcccttcccctgcctctatgagggtgccttcctacctgcctgcctactcctgcctccctg 296
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 tccatccccctgcctctatgagggtgcctccctacctgcctgcctactcctgcctccctg 499
Query: 297 cccttgcattcccctacactggggaattcagcctccacagaaccaaggatttcccctccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccttgcattcccctacactggggaattcagcctccacagaaccaaggatttcccctccc 559
Query: 357 aatgatgcccgataaggcaatcctctgctacatatgcagctggagccatgggtccctcca 416
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatgatgcccgataaggccatcctctgctacatatgcagctggagccatgggtccctcca 619
Query: 417 agtgtactctttggtgggtagtctagttcctgggaactctggagggtctggttg------ 470
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 agtgtactctttggtgggtagtttagttcctgggaactctggagggtctggttggttgat 679
Query: 471 ----ttgttgttcctatggggttgcaaacccattcagcccctacagtccttgcccgaact 526
|||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||
Sbjct: 680 attgttgttgttcctatggggttgcaaacccattcagctcctacagcccttgcctgaact 739
Query: 527 cctccattgggatctctgcactcagtctgatgtttggctgcatacatccgcttctgtatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cctccattgggatctctgcactcagtctgatgtttggctgcatacatccgcttctgtatt 799
Query: 587 ggtcaggatc 596
||||||||||
Sbjct: 800 ggtcaggatc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
