BAC Information

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BAC

Clone NameMSMg01-335G21
Chromosome10 (Build37)
Map Location 105,266,072 - 105,266,643
singlet/doubletsinglet
Overlap geneBC067068
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneCcdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335G21.T7 (MSMg01no335_g21.b1)MSMg01-335G21.TJ (MSMg01no335_g21.g1)
ACCAG450687AG450688
length721748
length of high quality
(start - end)
572 (61 - 632)508 (76 - 583)
definitionCHROMAT_FILE: MSMg01no335_g21.b1 PHD_FILE: MSMg01no335_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:11 2005CHROMAT_FILE: MSMg01no335_g21.g1 PHD_FILE: MSMg01no335_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATCCGCGGAATTCTTGAGAG
ACTTGGCGGAATTCCTGGGAAAGAATGGACTTGCTGGTGAGGTGAGAGAG
CAAGCAGGCAAAGAGAAAAAGCTTTCTTCTTCCATGTCCTTATAGAGTCT
TCAAGCAGAAGGCATGGATCAGATTAGAGGTGGATCTTCCACTTCAAAAG
ATACGAATAAACTAATGTGCCTTCACATCTCAAAGGCCTGTATTGACAGC
CAAGAATAGCCATCACAGGTACCTAGAGAGCAAGACCCTATACACTTTAG
GGTCAAAAGTGTGATAAGAAAGAGTCAAAGAGGTTTTCTATTCCCGGAAG
GTAGATACCTAAGAAAGCCACCGCCTTCAGCCTACAGAACTTACTGAAAC
CAGGGTCCAGATGGGGCAGGCTCTGTCCTGAGCTGGCACTGGAACCTGAC
AGTGTTGCCATGTGGTATTGTTTTGGAGGCGTAAAAGATGTAAGATTGAG
CTGGTCATGTTTCCTTCCTCCGTGATTTCACAGGGTCACTGAGACCTGGC
AGCATGTGGCAGTCAAAGTCCCAGCGAGGAGATCCAGAGAGGCCATTGTG
ACGGGGAAGCCTGAGTTACTGTGCACAGCCTGAGCTGTTAGAATGTCAGA
GTTCTGTGGTTTTCCCTAACGTGTTTCAGGATTGCTTTAGTTCAATCCTT
GGTCACCTTATCCCCATCCTC
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGACGCGGGTAAAAAGGCCAGCT
GGGACGCCCCCAAAGCATGGGGACTAAGACTGTATCGATCCACAGGGACC
GACCCGGTGACCCTGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGGACC
CCGCGTCCCCATTGGGCCTAATCCCGTGATCACTGAACAGCTACCCCCCT
CCCAACCCGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCCTTCA
GGCGCGGCCTCTATGGTGCCTGGGGCTCCCCCGCCTTCTCAGCAGCCTGG
GACGGGAGACAGGCTGCTAAACCTGGTAGAAGGAGCCTACCAAGCACTCA
ACCTCACCAGTCCCGACAAAACCCAAGAGTGCTGGCTGTGTCTGGTATCG
GGACCCCCCTACTACGAAGGGGTGGCCGTCCTAGGTACTTACTCCAACCA
TACCTCTGCCCCGGCTAACTGCTCCGTGACCTCCCAACACAAGCTGACCC
TGTCCGAAGTGACCGGGCAGGGACTCTGCGTAGGAGCAGTTCCCAAAACC
CATCAGGCCCTGTGTAATACCACCCAGAAGACGAGCGACTGGGTCCTACT
ATTTGGCCTCTCCCGCGGTGACCCTTTGGACTTTGCATACCGGGTTTCAC
TCCCCGGTCTATCCACTACTGCGTCTTAACTTAACCCCCGGATTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_g21.b1 MSMg01no335_g21.b1 CHROMAT_FILE:
MSMg01no335_g21.b1 PHD_FILE: MSMg01no335_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:11 2005
         (572 letters)



>mm_chr10_105265958_105266929
          Length = 972

 Score = 1029 bits (532), Expect = 0.0
 Identities = 562/572 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctgggaaagaatggacttgctggtgaggtgagagagcaagcaggcaaagagaaaaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attcctaggaaagaatggacttgctggtgaggtgagagagcaagcaggcaaagagaaaaa 627

                                                                       
Query: 61  gctttcttcttccatgtccttatagagtcttcaagcagaaggcatggatcagattagagg 120
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 626 gctttcttcttccatatccttatagaggcttcaagcagaaggcatggatcagattagagg 567

                                                                       
Query: 121 tggatcttccacttcaaaagatacgaataaactaatgtgccttcacatctcaaaggcctg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 566 tggatcttccacttcaaaagatactaataaactaatgtgccttcacatctcaaaggcctg 507

                                                                       
Query: 181 tattgacagccaagaatagccatcacaggtacctagagagcaagaccctatacactttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tattgacagccaagaatagccatcacaggtacctagagagcaagaccctatacactttag 447

                                                                       
Query: 241 ggtcaaaagtgtgataagaaagagtcaaagaggttttctattcccggaaggtagatacct 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggtcaaaagtgtgaaaagaaagagtcaaagaggttttctattcccggaaggtagatacct 387

                                                                       
Query: 301 aagaaagccaccgccttcagcctacagaacttactgaaaccagggtccagatggggcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagaaagccaccgccttcagcctacagaacttactgaaaccagggtccagatggggcagg 327

                                                                       
Query: 361 ctctgtcctgagctggcactggaacctgacagtgttgccatgtggtattgttttggaggc 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 ctctgtcctgagctggcactggaacctgacagtgttgccacgtggtattgttttggaggc 267

                                                                       
Query: 421 gtaaaagatgtaagattgagctggtcatgtttccttcctccgtgatttcacagggtcact 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 266 gtaaaagatgtaagattgagctggtcatgtttccttcctccgtaatttcacagggtcact 207

                                                                       
Query: 481 gagacctggcagcatgtggcagtcaaagtcccagcgaggagatccagagaggccattgtg 540
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagacttggcagcatgtggcagtcaaagtcccagcgaggagatccagagaggccattgtg 147

                                           
Query: 541 acggggaagcctgagttactgtgcacagcctg 572
           || |||||||||||||||||||||||||||||
Sbjct: 146 actgggaagcctgagttactgtgcacagcctg 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)