BAC Information

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BAC

Clone NameMSMg01-336B16
Chromosome10 (Build37)
Map Location 103,336,441 - 103,336,960
singlet/doubletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336B16.T7 (MSMg01no336_b16.b1)MSMg01-336B16.TJ (MSMg01no336_b16.g1)
ACCAG451204AG451205
length727733
length of high quality
(start - end)		512 (44 - 555)476 (73 - 548)
definitionCHROMAT_FILE: MSMg01no336_b16.b1 PHD_FILE: MSMg01no336_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:05 2005CHROMAT_FILE: MSMg01no336_b16.g1 PHD_FILE: MSMg01no336_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGCTTAGCATCTCTAATAACTGTGTGCGCTTATCATGACCTGTTT
CTTCAAATGTTTTCTAATGCTTCCCTGAAGACTACTCCAAATGCTCCTGA
AATACTTGGATAAAAAAGATCACAGAAACAACCTTATTTCTTACTATCAA
TAATTTATACTGGTTACTTAAGGTGATAAAACCCTTGACTTAAAAACTAT
AAAGGTTGAAATATTTATCTTGTCTCACGGCTTGAAAATATTTGGTCCAC
AGCTATGTTGCTCCATTTTCTCAACACAGAAAGGTTTTTGGTGGTTTGTT
TGTTCTTTTTCCTTTTCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTT
CTTTTTCATTTTCTTTTTCTTTTTCATTTTCATTTTCTTTTTCTTTTTCT
TTTTTTCTTTTTCTTTTTCCTTTTCTTTTCCTTTTTTCTTTTTCTTTTTC
ATTTTTCTCTTTCTCTTTCTCTTTCTCTTCTTTTCTTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTCTTTTTAAGAACTACAATA
TGTAGTCCCATAAAGATATGGTCTAAGAGAAAACTTACTTTCACTGAGAG
ACACTTTTGGAAATTTCTACACATCTATGAATTGATCAAATAATGAAGGG
GCCTCCGGCCCCCCCCGAGAAGGGAAG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTAAAATCAGGGACAAGACAAGACTG
TCCACTCTCTTCCCTATTTATTCAATACAGTATTTGAAGTTCTAGCTAGA
GCAATAAGACAACTAAAGAGATCAAGTGGATAGAAATTGGGAAGCAGGAG
TAAAGCATTACTATTTGTGTATGATATGATAGTACACTTTCTACCAGAGA
ACTCCTACAGCTGATAAACACCTTCAGCAAAGTGTCTGGATATAAAACTA
ACAAATATTCAGTAGTCAACCTATATACAAATGATAAAAGGATCAAGAAA
GAAATTAGGGAAACAACACCCTTTACAATAGCCACAAATAATATACTATA
AAAACAAGTGAAAGGCCTATATGACAAGAACTTCAGTTTCCTAAAAAATA
AATTGAAGAAGATATTTGGAGATAGAAAGATCACCCATGCTCATGGATCA
GTAGGATTAATATAGTGAAGATGGCCATCCTACCAAAAACAATTTATAGA
TTCAATGCAATTCCCATCAAAATTATTNCATATTTACAAACATGACAGAA
CAATTCTCAACTTCNTATGAAAAAATAAAAAAACCACAGTATATCTAAAA
CAATTCTGGACAATAAGAAATTTCTGCGTATCAAATTTTGACTGGGTATG
CCGGAACTTATAAGTGACTCCCCGTGAATGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_b16.b1 MSMg01no336_b16.b1 CHROMAT_FILE:
MSMg01no336_b16.b1 PHD_FILE: MSMg01no336_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:05 2005
         (512 letters)



>mm_chr10_103336237_103337148
          Length = 912

 Score =  861 bits (445), Expect = 0.0
 Identities = 497/521 (95%), Gaps = 15/521 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagcttagcatctctaataactgtgtgcgcttatcatgacctgtttcttcaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcttagcatctctaataactgtgtgcgcttatcatgacctgtttcttcaaa 264

                                                                       
Query: 65  tgttttctaatgcttccctgaagactactccaaatgctcctgaaatacttggataaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttttctaatgcttccctgaagactactccaaatgctcctgaaatacttggataaaaaa 324

                                                                       
Query: 125 gatcacagaaacaaccttatttcttactatcaataatttatactggttacttaaggtgat 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 gatcacagaaacaaccttatttcttactatcaataatttatactggctacttaaggtgat 384

                                                                       
Query: 185 aaaacccttgacttaaaaactataaaggttgaaatatttatcttgtctcacggcttgaaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 aaaacccttgacttaaaaactataaaggttgaaatatttatcttgtctcatggcttgaaa 444

                                                                       
Query: 245 atatttggtccacagctatgttgctccattttctcaacacagaaaggtttttggtggttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 atatttggtccacagctatgttgctccattttctcaacacagaaagggttttggtggttt 504

                                                                       
Query: 305 gtttgttctttttccttttctttctttttctttttctttttctttttctttttctttttc 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttgttctttttctttttctttctttttctttttctttttctttttctttttctttttc 564

                                                                       
Query: 365 attttctttttcttttt-----cattttc------attttctttttcttttt-ctttttt 412
            ||||| ||||||||||     |||||||      ||||||||||||||||| |||||||
Sbjct: 565 tttttcattttctttttattttcattttctttttcattttctttttcttttttctttttt 624

                                                                       
Query: 413 t--ctttttctttttccttttcttttccttttttctttttctttttcatttttctctttc 470
           |  ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 tttctttttcttttcccttttcttttccttttttctttttctttttcctttttctctttc 684

                                                    
Query: 471 tctttctctttctcttcttttcttttcttttcttttctttt 511
           |||||||||| || |||||||||||||||||||||||||||
Sbjct: 685 tctttctctt-cttttcttttcttttcttttcttttctttt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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