BAC Information

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BAC

Clone NameMSMg01-337N14
Chromosome10 (Build37)
Map Location 124,460,211 - 124,551,020
singlet/doubletdoublet
Overlap genenone
Upstream gene4930503E24Rik, LOC671416
Downstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337N14.T7 (MSMg01no337_n14.b1)MSMg01-337N14.TJ (MSMg01no337_n14.g1)
ACCAG452523AG452524
length751770
length of high quality
(start - end)		701 (40 - 740)531 (71 - 601)
definitionCHROMAT_FILE: MSMg01no337_n14.b1 PHD_FILE: MSMg01no337_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:20 2005CHROMAT_FILE: MSMg01no337_n14.g1 PHD_FILE: MSMg01no337_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,460,211 - 124,460,877)(124,550,490 - 124,551,020)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTC
CCATTTATCTATTTTAAAGCCAGGAAAGCTGTAAGCTGCTTTCCTAGTAC
ATAGAAGCAAGAAGCATGATTGTTCTGGGTGAGCTAGACAGATAGGCTAA
CTGGAACTAGAAAGCTCCAGGGTCAGGGTCAAAGCTCATCTCAATAAGCT
GAAGTCTTATCAAGGAAGACACTCAATATCAACTTTAGGCCTCTACACTC
ATGTTTACACACGTGCACACCTGTATACATATACATTTACATATACCTAT
ACATCAATAGCACATACCTATGCACATGTAATTAAAAATAGAAGAAAGGG
GAAAAACAAAAAGACACAAACTCAAGTAGAGTATTGTTCATATGTGACAT
CTTTAAGAGTGCAAGGTTTTTCCTTTCTGTGTTTTGGGATTGGGTGCCTT
ATATTAGGGACATGAGAATTTATTAAGAATGGTTCTACCATTTTAAATGT
AACATTGGTCTTAAAGATTGCTCATAATCAATTTGGATGGTTGCAGTAAT
A

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTATAGCAACCCCATCGTAAATAAATGG
TGATGTGAAGACGGATAAGGCAAGCATTTCATCAAAGTCCAGGGATGGCA
TTAGGAAAATGGTGGTATTTGTGCTTGCTATGGAGTTTACCTGGTTTAGG
TGCAATAAAGTCTTTCAAAATTGTAGGCTAATTGAGTTGTTTTGAATGAT
TTTAAAATGTTACCAGTAGACAATAAGGAAAACATCAGCACTACTGAGTC
AAGAAGTAAAGGATGTACCAGGGCTTCTGAGGAGACACTAAACTTTGTTA
GTACCAGGGGAAAGAGAGAAAATTAGACCCAAAGTGTAGCTGCAAAGGTT
GGCAAGATTGCCAAAGAGATTGAATGCCCACTGTCAGTTATTACTAATGT
CAAAGTCAGGCCTCTGAAAGAAAAACAGCAAAATTGAGGTCACAGATGAA
GATGAGCCAGAGGAACATCACTGCCTTGGACAGAAACCCAGAATTAAAGG
ACATGTCACAGGCTTCCTTCTCTATAAAGAGAGCATGCTATCCATTCCAG
GTCCTGGGTGACTTATAACATGGCTTTTCCCCTTTCTCAAAACTACCCCT
AGGAAGCCTCATGGAATCTAGGGAGACAATCAAATCTATGCTGTACTCAT
AGGTTGAGACNATCCAGGAGGAAATGAGGTGAAACCCAATTATCTGCCAG
ACAAGGGTTAAAAAGCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_n14.b1 MSMg01no337_n14.b1 CHROMAT_FILE:
MSMg01no337_n14.b1 PHD_FILE: MSMg01no337_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:20 2005
         (701 letters)



>mm_chr10_124460007_124461107
          Length = 1101

 Score = 1236 bits (639), Expect = 0.0
 Identities = 660/667 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttcttctctgagccccattttttaatggggttatttgattttctgaagtc 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagctctgagccccattttttaatggggttatttgattttctgaagtc 264

                                                                       
Query: 65  caccttcttgagttctttatatatattggatattagtcccctatctgatttaggataggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccttcttgagttctttatatatattggatattagtcccctatctgatttaggataggt 324

                                                                       
Query: 125 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 aaagatcctttcccaatctgttggtggtctttttgtcttattgatggtgtcttttgcctt 384

                                                                       
Query: 185 gcagaagctttgcaactttatgaggtcccatttatctattttaaagccaggaaagctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagaagctttgcaactttatgaggtcccatttatctattttaaagccaggaaagctgta 444

                                                                       
Query: 245 agctgctttcctagtacatagaagcaagaagcatgattgttctgggtgagctagacagat 304
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 445 agctgctttcctagtacatagaagcaagaagcaggaatgttctgggtgagctagacagat 504

                                                                       
Query: 305 aggctaactggaactagaaagctccagggtcagggtcaaagctcatctcaataagctgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggctaactggaactagaaagctccagggtcagggtcaaagctcatctcaataagctgaa 564

                                                                       
Query: 365 gtcttatcaaggaagacactcaatatcaactttaggcctctacactcatgtttacacacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcttatcaaggaagacactcaatatcaactttaggcctctacactcatgtttacacacg 624

                                                                       
Query: 425 tgcacacctgtatacatatacatttacatatacctatacatcaatagcacatacctatgc 484
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcacacctgtatacatttacatttacatatacctatacatcaatagcacatacctatgc 684

                                                                       
Query: 485 acatgtaattaaaaatagaagaaaggggaaaaacaaaaagacacaaactcaagtagagta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatgtaattaaaaatagaagaaaggggaaaaacaaaaagacacaaactcaagtagagta 744

                                                                       
Query: 545 ttgttcatatgtgacatctttaagagtgcaaggtttttcctttctgtgttttgggattgg 604
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgttcatatgtgtcatctttaagagtgcaaggtttttcctttctgtgttttgggattgg 804

                                                                       
Query: 605 gtgccttatattagggacatgagaatttattaagaatggttctaccattttaaatgtaac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtgccttatattagggacatgagaatttattaagaatggttctaccattttaaatgtaac 864

                  
Query: 665 attggtc 671
           |||||||
Sbjct: 865 attggtc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_n14.g1 MSMg01no337_n14.g1 CHROMAT_FILE:
MSMg01no337_n14.g1 PHD_FILE: MSMg01no337_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:21 2005
         (531 letters)



>mm_chr10_124550290_124551220
          Length = 931

 Score =  949 bits (491), Expect = 0.0
 Identities = 521/531 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttatagcaaccccatcgtaaataaatggtgatgtgaagacggataaggcaagcatttc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgttatagcaaccccatcataaataaatggtgatgtgaagacggataaggcaagcatttc 672

                                                                       
Query: 61  atcaaagtccagggatggcattaggaaaatggtggtatttgtgcttgctatggagtttac 120
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 671 atcaaagtccagggatggcattaggaaaatggtggaatttttgcttgctatggagtttac 612

                                                                       
Query: 121 ctggtttaggtgcaataaagtctttcaaaattgtaggctaattgagttgttttgaatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctggtttaggtgcaataaagtctttcaaaattgtaggctaattgagttgttttgaatgat 552

                                                                       
Query: 181 tttaaaatgttaccagtagacaataaggaaaacatcagcactactgagtcaagaagtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttaaaatgttaccagtagacaataaggaaaacatcagcactactgagtcaagaagtaaa 492

                                                                       
Query: 241 ggatgtaccagggcttctgaggagacactaaactttgttagtaccaggggaaagagagaa 300
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 491 ggatgtaccagggcttctgaggagacactaaactttgttagtgcccggggaaagagagaa 432

                                                                       
Query: 301 aattagacccaaagtgtagctgcaaaggttggcaagattgccaaagagattgaatgccca 360
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 431 aattagactcaaagtgtagctgcaaagtttggcaagattgccaaagagattgaatgccca 372

                                                                       
Query: 361 ctgtcagttattactaatgtcaaagtcaggcctctgaaagaaaaacagcaaaattgaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgtcagttattactaatgtcaaagtcaggcctctgaaagaaaaacagcaaaattgaggt 312

                                                                       
Query: 421 cacagatgaagatgagccagaggaacatcactgccttggacagaaacccagaattaaagg 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 311 cacagatgaagatgagccagaggaacatcactgccttggatagaaacccagaattaaagg 252

                                                              
Query: 481 acatgtcacaggcttccttctctataaagagagcatgctatccattccagg 531
           ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 251 acatgtcacaggcttccttctttataaagagagcaagctatccattccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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