BAC Information

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BAC

Clone NameMSMg01-338E04
Chromosome10 (Build37)
Map Location 75,600,906 - 75,743,535
singlet/doubletdoublet
Overlap geneSlc5a4a, LOC100040150, Prmt2, S100b, Dip2a
Upstream geneBcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b
Downstream genePcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338E04.T7 (MSMg01no338_e04.b1)MSMg01-338E04.TJ (MSMg01no338_e04.g1)
ACCAG452836AG452837
length742757
length of high quality
(start - end)
580 (42 - 621)365 (67 - 431)
definitionCHROMAT_FILE: MSMg01no338_e04.b1 PHD_FILE: MSMg01no338_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:51 2005CHROMAT_FILE: MSMg01no338_e04.g1 PHD_FILE: MSMg01no338_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,600,906 - 75,601,467)(75,743,169 - 75,743,535)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGATTTGCTTATTGCTCCAAAGAACACAAATGGAGCAAGGTACAGAG
CCCAGAAGTGACTGGGTAGTCTGGGACCTTGACTAACAGAGTTCCACTGA
CTCTCCTCACTGATACACACAAATGTATTCAGGATAAAAGGAATACAATC
CACAAACTCAACGTTGTGTGAACGTCATCCTACCCTGTACTGGGAGGCCT
GGAACCATTACTAATGCATGGAAGGAACTCAAGTGTGAAGCTCTCACAAT
GATTCAAGTCCATCATCTTTGCTCGTAAAGATTTTTCAGCAACATCACCT
GTCAGGATTCTAGCTCTCCAATTCTCAAAGTCTTCAGGAAGCCAAGGGTT
TCATCCCCCAATGGGATGAAATACTGGGTCACTCTCAGATTACTAGAGGA
AATGAACTATGATCTTGTAACCTGCCTAAACAAGCTATCTTCTGACATAC
CAGAAAGAAGAGGGCGTTAGATCTCATTACAGATGGTCGTGAGCCACCCT
GTGCTTGCTGGGAATTAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTCT
TAACTGCTGAGCCATCTCTCCAGTCCAAGAAATGTTTTTTTTAAGTGTTT
ATATTGTATGATAAAAAAATCTTAGAGATAACATACAATACCTAATTTTT
ATGTCAAGAACAAACAAGAAAGCTAAATTAACCCAAACTCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACACATTTCTGAAACGAAGCAGCGCTTTCTGGAAG
GGACGCTCCACCCATGTAACGTGTTGATGTGCCCTCACACGTGCGTTACC
AACCTTCCCAAGCCTCGCCAGAAACAGCCAGGTTAGTACCTAACAGCGAG
GCCTCCTGGCCTTGACGGGCTGGCTGCAGTGGGTGTAGCTGCATTGGATC
TTGCAGGAGTCAGTACCCCCACCTCCTTGGGCCTGGGGTTGAGTTAAGGA
TCAGACTGGGTGTGTTTATTTGCCTGGTTCACGAAATGGGATGCTGCTGG
TGCAGCTGCCTGTTGGTACCCACCTGCCTCCTGGTAATCAGTTTTAATGA
TACATTCAAGGGTACATTAATGTCTGCAAGGAGATGTAGGGTCTGGATCC
AAGAAGCCCCTGGTAGCCACTAGGGTTTTAGGAAGTGGAGTTTCTCAAGG
GTTAATTTCAGGTTTCTGATTTTACACAAAAAATAAGTTATAAAGGCCAG
TTTAGCTAGCACAATCAGTTTTCTGAATTTGCATATGTAAATATTTTAGG
AAAAGCTGGCGTTCCTTTTACTGATTACTGAACACATTAGTATGTCCCCT
ATATAATAACACCCTTCGAAGGATTCCGGGTTTACACATGGAAACATAGG
CATAACTTATTAAAACATTAATTTGGGTTAGCCACTCCCGACAATATTGT
CACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_e04.b1 MSMg01no338_e04.b1 CHROMAT_FILE:
MSMg01no338_e04.b1 PHD_FILE: MSMg01no338_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:51 2005
         (580 letters)



>mm_chr10_75600702_75601681
          Length = 980

 Score =  986 bits (510), Expect = 0.0
 Identities = 553/576 (96%), Gaps = 14/576 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggatttgcttattgctccaaagaacacaaatggagcaaggtacagagcccag 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggaagtgattattgctccaaagaacacaaatggagcaaggtacagagcccag 264

                                                                       
Query: 65  aagtgactgggtagtctgggaccttgactaacagagttccactgactctcctcactgata 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 aagtgactgggtagtctgggaccttgactaacagagttctactgactctcctcactgata 324

                                                                       
Query: 125 cacacaaatgtattcaggataaaaggaatacaatccacaaactcaacgttgtgtgaacgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacaaatgtattcaggataaaaggaatacaatccacaaactcaacgttgtgtgaacgt 384

                                                                       
Query: 185 catcctaccctgtactgggaggcctggaaccattactaatgcatggaaggaactcaagtg 244
           ||||||||              ||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 catcctac--------------cctggaaccattactgatgcatggaaggaactcaagtg 430

                                                                       
Query: 245 tgaagctctcacaatgattcaagtccatcatctttgctcgtaaagatttttcagcaacat 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 431 tgaagctctcacaatgattcaagtccatcatctttgctcataaagatttttcagcaacat 490

                                                                       
Query: 305 cacctgtcaggattctagctctccaattctcaaagtcttcaggaagccaagggtttcatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cacctgtcaggattctagctctccaattctcaaagtcttcaggaagccaagggtttcatc 550

                                                                       
Query: 365 ccccaatgggatgaaatactgggtcactctcagattactagaggaaatgaactatgatct 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 551 ccccaatgggatgaaatactgggtcactctcagattactagaggaaattaactatgatct 610

                                                                       
Query: 425 tgtaacctgcctaaacaagctatcttctgacataccagaaagaagagggcgttagatctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 611 tgtaacctgcctaaacaagctatcttctgacataccagaaagaagagggtgttagatctc 670

                                                                       
Query: 485 attacagatggtcgtgagccaccctgtgcttgctgggaattaactcaggacctctggaaa 544
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 attacagatggtcgtgagctaccctgtgcttgctgggaattaactcaggacctctggaaa 730

                                               
Query: 545 agcagtcagtgctcttaactgctgagccatctctcc 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 731 agcagtcagtgctcttaactgctgagccatctctcc 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no338_e04.g1 MSMg01no338_e04.g1 CHROMAT_FILE:
MSMg01no338_e04.g1 PHD_FILE: MSMg01no338_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:51 2005
         (365 letters)



>mm_chr10_75742969_75743735
          Length = 767

 Score =  652 bits (337), Expect = 0.0
 Identities = 359/367 (97%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatttctgaaacgaagcagcgctttctggaagggacgctccacccatgtaacgtgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacatttctgaaacgaagcagcgctttctggaagggacgctccacccatgtaacgtgttg 508

                                                                       
Query: 61  atgtgccctcacacgtgcgttaccaaccttcccaagcctcgccagaaacagccaggttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgtgccctcacacgtgcgttaccaaccttcccaagcctcgccagaaacagccaggttag 448

                                                                       
Query: 121 tacctaacagcgaggcctcctggccttgacgggctggctgcagtgggtgtagctgcattg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tacctaacagcgaggccgcctggccttgacgggctggctgcagtgggtgtagctgcattg 388

                                                                       
Query: 181 gatcttgcaggagtcagtacccccacctccttgggcctggggttgagttaaggatcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatcttgcaggagtcagtacccccacctccttgggcctggggttgagttaaggatcagac 328

                                                                       
Query: 241 tgggtgtgtttatttg--cctggttcacgaaatgggatgctgctggtgcagctgcctgtt 298
           |||||||||  |  ||  ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgggtgtgtgcacctgctcctggctcacgaaatgggatgctgctggtgcagctgcctgtt 268

                                                                       
Query: 299 ggtacccacctgcctcctggtaatcagttttaatgatacattcaagggtacattaatgtc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggtacccacctgcctcctggtaatcagttttaatgatacattcaagggtacattaatgtc 208

                  
Query: 359 tgcaagg 365
           |||||||
Sbjct: 207 tgcaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space:   269848
Effective search space used:   269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)