BAC Information

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BAC

Clone NameMSMg01-341L03
Chromosome10 (Build37)
Map Location 56,150,928 - 56,151,291
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L03.T7 (MSMg01no341_l03.b1)MSMg01-341L03.TJ (MSMg01no341_l03.g1)
ACCAG455428AG455429
length773745
length of high quality
(start - end)
367 (66 - 432)392 (72 - 463)
definitionCHROMAT_FILE: MSMg01no341_l03.b1 PHD_FILE: MSMg01no341_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005CHROMAT_FILE: MSMg01no341_l03.g1 PHD_FILE: MSMg01no341_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGA
ATTCCAAGAAAGCCAGGATGCACAGAANAAAAAAAAAAACAAAAAACAAA
CAAACAAACAAAAAACCCTGTCTCAAAAACAAAAACAAAACAAACAAGCA
AAACCTAATTAAAAACAAAACAACAACATTCCAAGGGTCTAACATGGTGG
TTGTAATTGTTACAACACTGTCTGCATTTATTTAGAAGAAAAATGACTAG
CTTATCATCCATCTTTTGTTCCCTGGATGTAGCACCCATTAAATACCCAA
TAAATGTGTTGGATGAATAAATAGGGAGTGAATCATAAGAATGAGGTACC
TGAGGAGGAAAATGCTCGCCAGCCAAACAATGGAACCTCTATGGAGAAGA
AAGAGGAGGAAGAGGAGGAGGAGGAGGAGGNNNTTTTTTTTNTNTTTTTT
TTTGTTTTCTTTTTTTTTGCCCTTTCCTTTCCTTTCGTTGTCCCCCTTCG
TTTCTCTGTTTTCCCTGTCTCTCCTCGTCCTTCCTTTTTCCCCTCTTCCC
TTTCCCTTTCCCCTCTTTCCTTTTCCCTTTCTTCCCTCTTTTTTTTCTTC
CCCCCTTTTTTCCCTTTTCTTCCCCTTTTTTTCCTTCTTCGCCCTCCCTT
CTTTTCCTTTTCCCTTCTTTCTTGTCCGTTCTTCCCCCTCCCCCTTTGTT
CGCTTTTTCCCGCCCTTGTCTTCCCTCGTCTTTTTTTTTCCCGTTTTCCC
TCGCCCTCGTTCTTTTCCTCTTT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATCCCGAATGGCAGAGAA
ACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAATACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGGTCAAA
AACTCAGGTAACAGCAGATGTTGGCGAGGATGTGGAGAAAGGGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGACCCCACA
ATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAA
CACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCATCTATTAACAAAAATGAATTTAT
GAAATTCCTAGGCCAATGTATGGACCTGGAGGGTAATATTCTGACGGAAG
TACTCCCCCCCCTCGGAAACTTGTCAAAATGCACTCCCTGATATATGGTA
AATTACCCTCACACCTTAGATATCTTGATATAAGAAATACTTTGTCAACG
ATGAAAGTTCCAAAAAACACCAAACCAATGGGTGTTCCTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l03.b1 MSMg01no341_l03.b1 CHROMAT_FILE:
MSMg01no341_l03.b1 PHD_FILE: MSMg01no341_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:01 2005
         (367 letters)



>mm_chr10_56150726_56151493
          Length = 768

 Score =  642 bits (332), Expect = 0.0
 Identities = 357/368 (97%), Gaps = 7/368 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatgcacagaanaaaaaaaaaaacaaaaaacaaacaaacaaacaa--aaaaccctgtct 58
           ||||||||||    ||||||||||||||||||||||||||||| ||  ||||||||||||
Sbjct: 203 ggatgcacag----aaaaaaaaaacaaaaaacaaacaaacaaaaaaacaaaaccctgtct 258

                                                                       
Query: 59  caaaaacaaaaacaaaacaaacaagcaaaacctaattaaaaacaaaacaacaacattcca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaaaacaaaaacaaaacaaacaagcaaaacctaattaaaaacaaaacaacaacattcca 318

                                                                       
Query: 119 agggtctaacatggtggttgtaattgttacaacactgtctgcatttatttagaagaaaaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 agggtctaacatggtggttgtaattgttacaacactgtctgcatttatttagaataaaaa 378

                                                                       
Query: 179 tgactagcttatcatccatcttttgttccctggatgtagcacccattaaatacccaataa 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 tgactagcttatcatccatcttttgttccctggatgtagcacccattaaatacccagtaa 438

                                                                       
Query: 239 atgtgttggatgaataaata-gggagtgaatcataagaatgaggtacctgaggaggaaaa 297
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgtgttggatgaataaataagggagtgaatcataagaatgaggtacctgaggaggaaaa 498

                                                                       
Query: 298 tgctcgccagccaaacaatggaacctctatggagaagaaagaggaggaagaggaggagga 357
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 499 tgctcgccagccaaacaatggaacctctatggagaagaaagaggaggaggaggaggagga 558

                   
Query: 358 ggaggagg 365
           ||||||||
Sbjct: 559 ggaggagg 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)