Query= MSMg01no342_l11.b1 MSMg01no342_l11.b1 CHROMAT_FILE:
MSMg01no342_l11.b1 PHD_FILE: MSMg01no342_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:18 2005
(552 letters)
>mm_chr10_33265571_33266522
Length = 952
Score = 977 bits (505), Expect = 0.0
Identities = 535/551 (97%), Gaps = 11/551 (1%)
Strand = Plus / Minus
Query: 1 atgatgtggattgtgaacaagtaccaatttgagttctttcaggaatctgacatttcagca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgatgtggattgtgaacaattaccaatttgagttctttcaggaatctgacatttcagca 492
Query: 61 gatgagatatacttagtataatctataaaatatgggtttagtattttccatactatccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gatgagatatacttagtataatctataaaatatgggtttagtattttccatactatccca 432
Query: 121 aaatgatagatccataagatgtattaagggaagcaatatggttagcatgtcaaagcacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaatgatagatccataagatgtattaagggaagcaatatggttagcatgtcaaagcacag 372
Query: 181 aaattgtggtaggtttaaacacagtggaagaggactactagagaggctggaggagaaccg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaattgtggtaggtttaaacacagtggaagaggactactagagaggctggaggagaacca 312
Query: 241 gatataccaacttctatagtaattatgtgtacttcctacattatggtacagaagataata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatataccaacttctatagtaattatgtgtacttcctacattatggtacagaagataata 252
Query: 301 ttatgtgtgtggtatatacatggctattatgaataactattattacagctc----c---- 352
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 ttatgtgtgtggtatatacatggctattatgaataactattattacagctctcttcttta 192
Query: 353 ---aaaacttctttatagagttctatgtcatatgtacaatgcttaatttaataagatttg 409
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tatagaacttctttatagagttctatgtcatatgtacaatgcttaatttaataagatttg 132
Query: 410 aaacatagaccaagatatttataacagtccttttgtttttaaatgctgagaacatgaatg 469
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaacatagacgaagatatttataacagtccttttgtttttaaatgctgagaacatgaatg 72
Query: 470 gtgctttaaatagtattttaaaaatagtctattctaaaaacatccatcatatttataaca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gtgctttaaatagtattttaaaaatagtctattctaaaaacatccatcatatttataaca 12
Query: 530 aaaggttcata 540
||||| |||||
Sbjct: 11 aaaggatcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_l11.g1 MSMg01no342_l11.g1 CHROMAT_FILE:
MSMg01no342_l11.g1 PHD_FILE: MSMg01no342_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:19 2005
(385 letters)
>mm_chr10_33075482_33076266
Length = 785
Score = 308 bits (159), Expect = 5e-88
Identities = 284/385 (73%), Gaps = 90/385 (23%)
Strand = Plus / Plus
Query: 1 ctgagcttggatcccattgactgtggagtgactagatgtgcatgtgtctatattccaaat 60
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagcttggatcccatcaactgtggaatgactagatgtgcatgtgtctatattccaaat 260
Query: 61 gctagagagacagaaacaggaagatatttgggtttccactacccagtaatgctaacacac 120
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gctagagagacagaagcaggaagatatttgggtttccactacccagtagtgctaacacac 320
Query: 121 cattaatctcctgcatcagggaatgattctgctttaaaaatataaagtggggggaagggt 180
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcatctcctgcatcagggaatgattctgctttaaaaa-------------------- 360
Query: 181 atgggggacttttgggatagcattggaaatgtaattgaggaaaatatgtaataaaaaata 240
Sbjct: 360 ------------------------------------------------------------ 360
Query: 241 tatattaaaaaataaagtgaagacctatggagaaaggcaacttatgttaacatctggtct 300
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 ----------aataaagtgaagacctatggagaaaggcaacttatgttaacatcttttct 410
Query: 301 gtgtatatgcatcttcatgcacatgtcacacacccacatatatatgtacacaagcatata 360
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 411 gtgtatatgcaccttcatgcacatgtcacacaaccacatatatatgtacacaagcatata 470
Query: 361 tcacatgtgtgcatgattatacatg 385
||||||||||||||||||| |||||
Sbjct: 471 tcacatgtgtgcatgattacacatg 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
