BAC Information

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BAC

Clone NameMSMg01-344G19
Chromosome10 (Build37)
Map Location 79,712,416 - 79,712,871
singlet/doubletsinglet
Overlap geneNdufs7
Upstream geneAJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1
Downstream geneGamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344G19.T7 (MSMg01no344_g19.b1)MSMg01-344G19.TJ (MSMg01no344_g19.g1)
ACCAG457493AG457494
length951767
length of high quality
(start - end)		---456 (65 - 520)
definitionCHROMAT_FILE: MSMg01no344_g19.b1 PHD_FILE: MSMg01no344_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:36 2005CHROMAT_FILE: MSMg01no344_g19.g1 PHD_FILE: MSMg01no344_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTTCTTTTTTTTNNNTTTTTTTACCCGCTTTTCTCTCCTTTCCTT
TTTCTTCTTTCCCTCTTTCACACCCTTATCCTCCTCCTCTTCCTCCTTTC
CATCCCACTATCCACATTCTCTTTTTTCTTTCTTTTTTTTTTTCCTCCCC
ATTCCTTCCTACTCTCCCCCTCTATTTATTTTTTTTTTTTNCCCCTTTCT
TATAATCTATCANNTCTCCTTTATTAAAATATTTGCCGNTGCGCCCCGCT
CTTTTAAATTACCCGNAAACCTTTTCCCACACCCTTTAAATTTTTTTTTT
CCCCCCAGNNAGAGTAATCCCCGNCGGGNNNAAATTTTCCACCTTTCCCT
GTTTTATCCCACCCCCACGAGAACCTGGGGNCCCCTTCCTAAAAACCTTT
CCAGGAATAAATACCCCAACCCNTTGTGCCCCCTTTTCCCTTTGGGCGCC
CCCTTTCTCCTTTGACCCCCTTTCTCCCCCAAAAAGTTTTGGGCTCTTTG
TGGGGGGGGAAAAAATTTTTTTTTATTAAAATATAAAAGAGGGGGGTTGG
GTTTGGCCCAACCCCCCACCCCGGGTTTCCTTTGGGGCCTTTCCGCGGGA
ATTCTCCAAAACCTTTTTTTTAAAACAAAAAGAAACACCACCCCCTTTTT
TTTTTTTAAAAAGGGCGCCCCCCAATTTTTTTTGTGTTTGTGGCGGTNTT
GGGTTTAATAATAAACCCCCCCTTTTTTTTTATAAAAAATCTCTCTCCCC
ACAGACCACACCCTCTTTGGGGGTTGTATAAAATAGTCCCTTAAATAAAA
AAAGGCCCCCCCACAACCGCCCCCCGTGTGTTTTTCTCCCCAAACCACTG
TGGGGGGGGGGGGATAAAAATTTTTCTCTCCCTCCGGGGGCGGGGGGGTN
TTCCCCTCTCTCTCCCTCCCCTCTCTATAATAAAACAAACTTAGTTGTTC
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACGTTACACAGTTCTGCATGGTCTACATAGCAAGTT
GCAGGCCTCCTGCTATCGTCCCTGATTATAGTCGGGAACGCTGAGGCCTG
TGTATCTTCCAACCTCAGGAAGCTGACTGCAGAAACCCGGCTGATGTCCC
CGAAGCACAGAGTGGGACAGGGGAGAGGCCCAGGACACTTAGGCCACCCA
CCCGGTGGCTCTTTCCATCTCATCCCCAACCTGGACAGCTAGCAAGGGCC
TCTAGAGCAGATGTCTTAGTTTCCCTGCCAAAGCTTTGGTGTCTTTCTCT
TTATGTACAGGGATTAAACACCTGTGCAGTTTGGTAGACGTGAGCGACAG
TTGCTAAGTGGAACCTCCCATCGCCTAGCAGGTTGCAGTGTTAACATAAG
GAGTGGGAGAACTCAGGAAGTCGGGTCTAACTCCTTCTGTGTTTTGTTGT
TGCTTTGAGACAGTGTCTGATGGGTCCTAGCTCAAACTCTATACTGTGGG
TGATCTTGAAAGCTTCATCCGAATGCCTTCACTGCTAATGGCTGGNATGG
CAAGTGTGCACAGTCAAGCCCCTTTATACCGCCCCCCGGATGGAACTTAA
AACTTGGTGGAGGCCCTGTAGGGATTCTGGCTAAACAAATTCCGGCCCCA
ATTGCTTGCTTTGTGAACAGGATCTCCTTTGTTTAAAAAGTGTGTTTTGT
AACCTCCGTACCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_g19.g1 MSMg01no344_g19.g1 CHROMAT_FILE:
MSMg01no344_g19.g1 PHD_FILE: MSMg01no344_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:36 2005
         (456 letters)



>mm_chr10_79712216_79713071
          Length = 856

 Score =  882 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgttacacagttctgcatggtctacatagcaagttgcaggcctcctgctatcgtccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgttacacagttctgcatggtctacatagcaagttgcaggcctcctgctatcgtccctg 260

                                                                       
Query: 61  attatagtcgggaacgctgaggcctgtgtatcttccaacctcaggaagctgactgcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatagtcgggaacgctgaggcctgtgtatcttccaacctcaggaagctgactgcagaa 320

                                                                       
Query: 121 acccggctgatgtccccgaagcacagagtgggacaggggagaggcccaggacacttaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccggctgatgtccccgaagcacagagtgggacaggggagaggcccaggacacttaggc 380

                                                                       
Query: 181 cacccacccggtggctctttccatctcatccccaacctggacagctagcaagggcctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacccacccggtggctctttccatctcatccccaacctggacagctagcaagggcctcta 440

                                                                       
Query: 241 gagcagatgtcttagtttccctgccaaagctttggtgtctttctctttatgtacagggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcagatgtcttagtttccctgccaaagctttggtgtctttctctttatgtacagggat 500

                                                                       
Query: 301 taaacacctgtgcagtttggtagacgtgagcgacagttgctaagtggaacctcccatcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaacacctgtgcagtttggtagacgtgagcgacagttgctaagtggaacctcccatcgc 560

                                                                       
Query: 361 ctagcaggttgcagtgttaacataaggagtgggagaactcaggaagtcgggtctaactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagcaggttgcagtgttaacataaggagtgggagaactcaggaagtcgggtctaactcc 620

                                               
Query: 421 ttctgtgttttgttgttgctttgagacagtgtctga 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgtgttttgttgttgctttgagacagtgtctga 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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