BAC Information

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BAC

Clone NameMSMg01-345I09
Chromosome10 (Build37)
Map Location 59,342,997 - 59,528,909
singlet/doubletdoublet
Overlap geneDnajb12, Ddit4, D10Ertd641e, Ascc1
Upstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936
Downstream geneSpock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345I09.T7 (MSMg01no345_i09.b1)MSMg01-345I09.TJ (MSMg01no345_i09.g1)
ACCAG458327AG458328
length740775
length of high quality
(start - end)		495 (34 - 528)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no345_i09.b1 PHD_FILE: MSMg01no345_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:59 2005CHROMAT_FILE: MSMg01no345_i09.g1 PHD_FILE: MSMg01no345_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(59,342,997 - 59,343,486)(59,528,566 - 59,528,909)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCATTCG
CTCCTATCAGAGAACCCTTAGCGAAATAAGACATTCCAACTCGCAGTCCT
TCCTGCAGTCTCTTGAAAGCGGTGTTTCGGAGTGGATGGATTGTTGAAGA
TCCCAGTGTCAGCCACCCCATCCCACCTTCTTCCTCAGCAAGCCCGGGTG
GCGGGTCTTATGGACTGCTACGGCTGCTGAGCTCCAGGTAGCTAATAGCC
TAGGTCTGAGACCTCCCAACCCAGGGAGGGAATAGTGATCTTGTCTTCGC
TACCCAATCGTCTCACTTTACCTGGTAACCTCCCCCTCCTTTTTGCGTTT
GTAACCGAAGTGACCAAAGAAAATTTTAATACCAGCTGGGAAGGAGAAAG
ACACAGGATTTGTTTCTGTGGAGTTAGTAAACTCTCTGACATGTAGCAGA
CTTTCAGAATTAAGAGACCCACATCTCATCGTGAGCTTGGGTTTCCCCAT
CTGGAAGTTCAGGAAGTTGGAACAGATAATGTATATAAACTAGAATACCC
ATAGTGCTTTTTCTGTGTAGAAAGTTCTTTCTCGTTGTGTTTGCCACCTG
ATCCTGTAAAGTCAGGAAAAAGAAAATCCCCCCTTCTATTTTTTCCAAGA
TGAGGAAATAACTCCTTCGAAAACGGCTTTATGAAGGGATACACCTAAAA
AGATGGAAACCCTTGAATATCCCTATCTGGTGTTATTTAA

CGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATGAAGCTCAAACAGCCTGTGGTAC
AAGTCATGGAAAGGAGCTTTCTGTGAAGAACCTTTAGGATGAAAGCAGGG
AAGGGAGGGGTAAAGGCCAGCGCATCTAAGATGCAGTGGCTCTCACTACT
GTTACACACTGTGATGGATAGTCTTGACTACACCCAGAGTCAACTAAAAC
CAAAGCAGCTGGGCACACCTGTGAGAGCAGGAGACACCTGTGAGGACTGG
AGACACCTGTGAGGGCTGGGCACTTTTGTGAGGGTTGGAGACACTTGTGA
GGGCTAGGCACACCTGTGAGGGCTGGGTACACCTGTGAGGGCTGGAGACA
CCTGTGAGGGCTGAGCACACCTGTGAGGTCTGAGCACACCTGTAAGGGCT
GGGCATACCTGTGAGGGCTGGAGACACTTGTGAGGGCTGAGCACACCTGT
GAGGGCTGGTCTTACCTGTGACGGTTGGATACTCCCGTGATGCCTGATCC
CCCCTGTATGGCCTGTGTACCCCTTGTACTATTTGGTCTCACCTGTTGAT
GCCTATATATACCTTGTGATGTACTGCGTATCTCACTCTGTAGTACTGGC
TATCAACTTTTTTGTATTATTTCTTTCTCTCCTCTATTATATCCTTATAT
ACACACTTTTCAATAGGCCATACATTATATATACCATCCATTTTTTTCTT
GTCTCTTTACTTCTTGTCTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_i09.b1 MSMg01no345_i09.b1 CHROMAT_FILE:
MSMg01no345_i09.b1 PHD_FILE: MSMg01no345_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:59 2005
         (495 letters)



>mm_chr10_59342792_59343686
          Length = 895

 Score =  924 bits (478), Expect = 0.0
 Identities = 487/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcattcgctcctatcagagaacccttagcgaaataagacattccaactcgcagtc 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcattcgctccaatcagagaacccttagcgaaataagacattccaactcgcagtc 265

                                                                       
Query: 66  cttcctgcagtctcttgaaagcggtgtttcggagtggatggattgttgaagatcccagtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttcctgcagtctcttgaaagcggtgtttcggagtggatggattgttgaagatcccagtg 325

                                                                       
Query: 126 tcagccaccccatcccaccttcttcctcagcaagcccgggtggcgggtcttatggactgc 185
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcagccaccctatcccaccttcttcctcagcaagcccgggtggcgggtcttatggactgc 385

                                                                       
Query: 186 tacggctgctgagctccaggtagctaatagcctaggtctgagacctcccaacccagggag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacggctgctgagctccaggtagctaatagcctaggtctgagacctcccaacccagggag 445

                                                                       
Query: 246 ggaatagtgatcttgtcttcgctacccaatcgtctcactttacctggtaacctccccctc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggaatagtgatcttgtcttcgctacccaatcgtctcactttacctggtaacctccccctc 505

                                                                       
Query: 306 ctttttgcgtttgtaaccgaagtgaccaaagaaaattttaataccagctgggaaggagaa 365
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atttttgcgtttgtaaccgaagtgaccaaagaaaattttaataccagctgggaaggagaa 565

                                                                       
Query: 366 agacacaggatttgtttctgtggagttagtaaactctctgacatgtagcagactttcaga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agacacaggatttgtttctgtggagttagtaaactctctgacatgtagcagactttcaga 625

                                                                       
Query: 426 attaagagacccacatctcatcgtgagcttgggtttccccatctggaagttcaggaagtt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attaagagacccacatctcatcgtgagcttgggtttccccatctggaagttcaggaagtt 685

                     
Query: 486 ggaacagata 495
           ||||||||||
Sbjct: 686 ggaacagata 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_i09.g1 MSMg01no345_i09.g1 CHROMAT_FILE:
MSMg01no345_i09.g1 PHD_FILE: MSMg01no345_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:59 2005
         (344 letters)



>mm_chr10_59528561_59529304
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgaagctcaaacagcctgtggtacaagtcatggaaaggagctttctgtgaagaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaatgaagctcaaacagcctgtggtacaagtcatggaaaggagctttctgtgaagaacct 290

                                                                       
Query: 61  ttaggatgaaagcagggaagggaggggtaaaggccagcgcatctaagatgcagtggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttaggatgaaagcagggaagggaggggtaaaggccagcgcatctaagatgcagtggctct 230

                                                                       
Query: 121 cactactgttacacactgtgatggatagtcttgactacacccagagtcaactaaaaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cactactgttacacactgtgatggatagtcttgactacacccagagtcaactaaaaccaa 170

                                                                       
Query: 181 agcagctgggcacacctgtgagagcaggagacacctgtgaggactggagacacctgtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 agcagctgggcacacctgtgagagcaggagacacctgtgaggactggagacacctgtgag 110

                                                                       
Query: 241 ggctgggcacttttgtgagggttggagacacttgtgagggctaggcacacctgtgagggc 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ggctgggcacacctgtgagggttggagacacttgtgagggctaggcacacctgtgagggc 50

                                                       
Query: 301 tgggtacacctgtgagggctggagacacctgtgagggctgagca 344
           |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 49  tgggtacacctgtgagggctggagacacctgtgagggccgagca 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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