BAC Information

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BAC

Clone NameMSMg01-346C10
Chromosome10 (Build37)
Map Location 5,043,085 - 5,043,577
singlet/doubletsinglet
Overlap geneSyne1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346C10.T7 (MSMg01no346_c10.b1)MSMg01-346C10.TJ (MSMg01no346_c10.g1)
ACCAG458806AG458807
length789744
length of high quality
(start - end)		393 (39 - 431)494 (68 - 561)
definitionCHROMAT_FILE: MSMg01no346_c10.b1 PHD_FILE: MSMg01no346_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:46 2005CHROMAT_FILE: MSMg01no346_c10.g1 PHD_FILE: MSMg01no346_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
GCTCCCCACGATGAAGTGTGATTCAGGATACAGAAGCCAAATAAACTCTT
TCCTCTCCAAGTGGCTTTGGTCATGGTGTTTCATCACAGCAATGGACACC
CTAAAACAATGGTGGACTTAATGAGATGACAGACTACATCTTTATCTCTG
TACCTTGGTTTGACCACTCTGTGGTGAAGCAAGCTATCAACATGTAGAAG
ATGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTAACTACTCTCCCA
AAGGTCCCGAGTTCAAATCCCAGCAATAATCACATGGTAGCTCACAAACA
TCTGTAATGGGATCTGATACTCTTTTCTGGTGTGTCTGAAGACAGCTACA
GTATATATATATATATATATATATATATTTTNTTCCCCCCCCCCCCCCTT
TTCCCCTCCTTTCCCCCTTCCCCTTCTTTTCTCTCCCTTTCCTCCCCTTT
TTTTTCCTTTTCCCCTCTTCTCTTTTTTTCCTTTTTCCTTTTTTCCCACC
TCCCTTTTTCTCTCTTCCCCTTTTTTCCTCCTCCCCCCCCCTCTTTTTTT
TTTCTCCCCTCCTCCCTCTTTTCTTCCCTTCCCCCTTCTTTTCTCTCTTT
TCTCTAACTCTCACTCCTTCTACCTCCTCTTTTTTTTCCTTTATCACCCC
CACCCCTCCCCCCCCTTATTTTTCATTTTTTCTCTTCTTCTCTCCTTATC
TTTCTCTCCCCTTTCTCTTCCCATTTTACCTTCTCTCTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACACAGAAATATCATGGTGACAATTGATGGAA
TATTCTGGAATTCAAGGGAGACATGACTAGCATTTAATTCTGGGTTTCCC
TTGTTTTGTGGAAGCCCGAGCACAGATCTTCCAAAGGAGAGGTACATTCA
AACAAAGGAAGGTTGGGTCCTGAGGACTGGACTTTGTGTAGAGTAGACAA
GAGAAGATGAGGAAGATTCAGAGTAGCTGTCTGGATACAGAGCTGTTACA
CTAACAACATGAGGAGATGGGAGCTGGAGCTAGGACACTGTGACATTAAG
AACAGGAAACTCTGGTGAGATTCTACTCTTATCTAGCATACTGTTTTCAA
TTTCTCCTCGTTTCCAATTGCTCTCCCCATCATGCACTGCCTCAATTAGG
AGTCCTGGTTTTTTTATTAGATATTTTCTTCATTTACAATTCAAATGCTA
TCCCAAAAGTCCCTTATACCCTCCACCCACCCTGATCTCCGACCCACCCA
CTCCCACTTCCTGGCCCTGGTATTCCCCTGTATTGGGGTATATAATCTTT
GCAAGACCAAGGCCCTCTCCTCCCATGATGGTCGATTAGGCCATCTTCTG
CTACATATGCAGCTAGAGAACTGAGCTTCCGGGGTACTGGTTAGATCAAA
TTGCTGGTTCCTCCAATGAGGTACAAACCCTTCCGTTCCTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_c10.g1 MSMg01no346_c10.g1 CHROMAT_FILE:
MSMg01no346_c10.g1 PHD_FILE: MSMg01no346_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:46 2005
         (494 letters)



>mm_chr10_5042885_5043777
          Length = 893

 Score =  886 bits (458), Expect = 0.0
 Identities = 485/494 (98%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacagaaatatcatggtgacaattgatggaatattctggaattcaagggagacatgac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacagaaatgtcatggtgacaattgatggaatattctggaattcaagggagacatgac 260

                                                                       
Query: 61  tagcatttaattctgggtttcccttgttttgtggaagcccgagcacagatcttccaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcatttaattctgggtttcccttgttttgtggaagcccgagcacagatcttccaaagg 320

                                                                       
Query: 121 agaggtacattcaaacaaaggaaggttgggtcctgaggactggactttgtgtagagtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggtacattcaaacaaaggaaggttgggtcctgaggactggactttgtgtagagtaga 380

                                                                       
Query: 181 caagagaagatgaggaagattcagagtagctgtctggatacagagctgttacactaacaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 caagagaagatgaggaagattcagagtagct-tctggatacagagctgttacactaacaa 439

                                                                       
Query: 241 catgaggagatgggagctggagctaggacactgtgacattaagaacaggaaactctggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgaggagatgggagctggagctaggacactgtgacattaagaacaggaaactctggtg 499

                                                                       
Query: 301 agattctactcttatctagcatactgttttcaatttctcctcgtttccaattgctctccc 360
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 agattctattcttatctagcatactgttttcaattcctcctcgtttccaattgctctccc 559

                                                                       
Query: 361 catcatgcactgcctcaattaggagtcctggtttttttattagatattttcttcatttac 420
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 560 catcatgcactgcctcaattaggagttctgttttttttattagatattttcttcatttac 619

                                                                       
Query: 421 aattcaaatgctatcccaaaagtcccttataccctccacccaccctgatctccgacccac 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 620 aattcaaatgctatcccaaaagtcccttataccctccgcccaccctgatctccaacccac 679

                         
Query: 481 ccactcccacttcc 494
           |||||||| |||||
Sbjct: 680 ccactcccgcttcc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space:   427372
Effective search space used:   427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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