Query= MSMg01no347_f17.b1 MSMg01no347_f17.b1 CHROMAT_FILE:
MSMg01no347_f17.b1 PHD_FILE: MSMg01no347_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:18 2005
(575 letters)
>mm_chr10_31689396_31690370
Length = 975
Score = 1073 bits (555), Expect = 0.0
Identities = 570/575 (99%)
Strand = Plus / Minus
Query: 1 cttagagtttcttactacaccttaactcttactctccacattcgcatgtctataatatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cttagagtttcttactacaccttaactcttactctccacattcgcatgtctataatatta 716
Query: 61 gttctggtgtacctactctcataacagacacttcttcaaatgccatttgctgtgagagtt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gttctggtatacctactctcataacagacacttcttcaaatgccatttgctgtgagagtt 656
Query: 121 aagtttagctttctattaaaattctaaaatgtcactgctatcattttctcatttccttgt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 655 aagtttagctttctattaaaattctaaaatgacactgctatcattttctcatttccttgt 596
Query: 181 caacttttttaatgaaatgcttattatttgttgagcaattaagcttctcgcaatgacttg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 595 caacttttttaatgaaatgcttattatttgttgagcaattaagcttcttgcaatgacttg 536
Query: 241 aatacataacacccctatcagaaacaaagtttttgtactaataacagcttttgtgtacaa 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 535 aatacataacacccctatcagaaacaaagtttttgtgctaataacagcttttgtgtacaa 476
Query: 301 cattggccattgttgttttgaaaaatgacatgaccaataatggggtccttacatatgaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cattggccattgttgttttgaaaaatgacatgaccaataatggggtccttacatatgaac 416
Query: 361 ttttgaaaacttactaagagacgtgaataaacatactgatttaaaatttttgacactatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttttgaaaacttactaagagacgtgaataaacatactgatttaaaatttttgacactatt 356
Query: 421 ctcatctaagcatataattatgaaagattttcttagatttaagcatttatatatcttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctcatctaagcatataattatgaaagattttcttagatttaagcatttatatatcttata 296
Query: 481 attctgagctggtttggcttttttgctggaaatctatcgtgtatgtaaaaatttcgttta 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 295 attctgagctggtttggcttttttgctggaaatctatcgtgtatgtaaaattttcgttta 236
Query: 541 taattttctaccttgtgctgtgctatcaagacttg 575
|||||||||||||||||||||||||||||||||||
Sbjct: 235 taattttctaccttgtgctgtgctatcaagacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_f17.g1 MSMg01no347_f17.g1 CHROMAT_FILE:
MSMg01no347_f17.g1 PHD_FILE: MSMg01no347_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:18 2005
(554 letters)
>mm_chr10_31595185_31596141
Length = 957
Score = 940 bits (486), Expect = 0.0
Identities = 539/562 (95%), Gaps = 13/562 (2%)
Strand = Plus / Plus
Query: 1 atgccatctgatcactttgaagatgatcaagtaatataaactgattccttgtcatctgtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atgccgtctgatcactttgaagatgatcaagtaatataaactgattccttgtcatgtgtg 260
Query: 61 atattcaggggacattataaaacacccagtgattattatcttaaattctcattctgtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atattcaggggacattataaaacacccagtgattattatcttaaattctcattttgtgtc 320
Query: 121 attcaacacactggttttttttccttcttatattccttcaatttctttatatgagacaca 180
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 attcaacacact-gctttttttccttcttatattccttctatttctttatatgagacaca 379
Query: 181 ggagaatatgttaaat--aagagacagcaaaaaagtactctaagttctaagcctttgtgc 238
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaggatatattaaataaaagagacagcaaaaaagtactctaagttctaagcctttgtgc 439
Query: 239 ttatctatatatataccatggaatttgatttcccttctattatgcaatgctattctgctt 298
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttatc----tatataccatggaatttgatttcccttctattatgcaatgctattctgctt 495
Query: 299 aataagtagaacatttaaaataaatatcaaaaagaaaaatattacttaatacatttagtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aataagtagaacatttaaaataaatatcaaaaagaaaaatattacttaatacatttagtg 555
Query: 359 tattttatttattcaagttttagttgagtactcatgatatctcagagaaatagatgggaa 418
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tattttatttattcaagattaagttgagtactcatgatatctcagagaaatagatgggaa 615
Query: 419 catagggaactcattttgcta-----gcacccactaattccttccttctccataaccctt 473
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 616 catagggaactcattttgctatgctagcacccactaattccttccttctccataaccctt 675
Query: 474 tctatatattgagacccattttt-ccagctttccactaacccttatgcttgcctccatct 532
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 676 tctatatattgagacccattttttccagctttccactaacccttattcttgcctccatct 735
Query: 533 ctctgagtttgcatccttttca 554
||||||||||||||||||||||
Sbjct: 736 ctctgagtttgcatccttttca 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 957
Length adjustment: 10
Effective length of query: 544
Effective length of database: 947
Effective search space: 515168
Effective search space used: 515168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
