BAC Information

Click to search

BAC

Clone NameMSMg01-347J17
Chromosome10 (Build37)
Map Location 104,175,042 - 104,379,704
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347J17.T7 (MSMg01no347_j17.b1)MSMg01-347J17.TJ (MSMg01no347_j17.g1)
ACCAG459908AG459909
length774753
length of high quality
(start - end)		547 (45 - 591)505 (81 - 585)
definitionCHROMAT_FILE: MSMg01no347_j17.b1 PHD_FILE: MSMg01no347_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:38 2005CHROMAT_FILE: MSMg01no347_j17.g1 PHD_FILE: MSMg01no347_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,379,162 - 104,379,704)(104,175,042 - 104,175,546)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTGATATTTTAATGTAACTTTAAAAAAATCTCTGTTTATTTGA
GTTATTATTATTTTTAGGTATGGAGTACCCAATATATATGTTATTTATGT
CACCAATTACCAAACAATACAGACATAAAATAATGACAAATTAATGACAC
ACTCATTGATTTTAATTAATTTTTAAATGGTAACTAGGTCAAAATAAACA
CTCATTAAATTTTAATTTTGCATTTTTCTTCCTTTCTCTGGAAGTATTTG
AGTAGACTGAGCATGAAAAACATTTGTCTGATATTTTTATCAGTAGATAC
CCTTACATGGATATGCAAAGAGTTCACATGAATAAATTCCCAAGGACATA
TTAGAACTTTCTCAAAACTTCAATAATTGGCAAGTTTATGCAAGCTGGAT
AGAAAATTCAAATAAAATGATTTGTGATGTCTCCATCTTCCCATTCTGAA
GACTATTCTTGGCTATGATTTTTGTGAAAGTGGATACGCATATCATCTTC
TACTTTTATACTAAAACTATAATTCACTTTTCACTGATGAAGAATAATCT
TTCAGGATTTGATTTTTCTAGNTATCTTAATTCTCTTTAACAAAAAATAC
TTCCTTCTTGNNNNNCTCCTTGTGTTCCTCTTTCTGTTCCTATTTNCTNT
CCTTTCTCTTCCTCTTCCTTTTTCCTCCTCTTTCCTCCTTCTTCTTTCCT
CCTTTTCTTCCTTTTTTTATCCCC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATTTAAATGTCAAATGT
TAACAACAGCAAGCTGTAGATCAGGGCAACAGCAAGCTGTAGATCAGGGA
AATAAATGACCTTAATTCTCTTTTGTAAAATCGCATTGCCCTGATAATTA
TAGGATCTAATTTCCTACTTCTTCACCTGCTGTACATATTTGAACATTTT
GCAGCTGTTCATTTCCATTTATATTTCTTTATAATCTTGCTATGCGACTT
CTGAGTTATCTGAGGCAGTGGCCAGACAGATGGTTAACTTCTCCAGAAGG
TCCATATATAAAGAACTATGAACTGTCATTGGGCATTAGAGAATAAAAAG
GAATTTACTAGACATTTTCTGAGGCTTTAATGAGAGCAATACCTGGGTTA
CTTGCAATTCTGTAAGAAAATCTACCTTGATCACCTGACAATAGAAAACA
GTGTTAAGAAATAGCCTTTTTCTGTGGTAGGACTTATAAACCGTGAAAAC
CTCTGTTTTGTTGGACATTATATAGGCAAAGGAATGTCCAAGATGANGCT
AAGTCCTTTTAAGTAATATTTTTGATTGACATACATTCATTGCTTATAGA
ATAGGATCCCAGGGGGACATTTTCCTTAATGTGAGGCACTTTGAGGATAA
TGGTCACCCCTGCCCCTCTTCCTGGGGAGGGTCGTTTATTCTTCTACTGG
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_j17.b1 MSMg01no347_j17.b1 CHROMAT_FILE:
MSMg01no347_j17.b1 PHD_FILE: MSMg01no347_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:38 2005
         (547 letters)



>mm_chr10_104378958_104379904
          Length = 947

 Score = 1035 bits (535), Expect = 0.0
 Identities = 541/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctgatattttaatgtaactttaaaaaaatctctgtttatttgagttattat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaattcattctgaaattttaatgtaactttaaaaaaatctctgtttatttgagttattat 688

                                                                       
Query: 65  tatttttaggtatggagtacccaatatatatgttatttatgtcaccaattaccaaacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tatttttaggtatggagtacccaatatatatgttatttatgtcaccaattaccaaacaat 628

                                                                       
Query: 125 acagacataaaataatgacaaattaatgacacactcattgattttaattaatttttaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acagacataaaataatgacaaattaatgacacactcattgattttaattaatttttaaat 568

                                                                       
Query: 185 ggtaactaggtcaaaataaacactcattaaattttaattttgcatttttcttcctttctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggtaactaggtcaaaataaacactcattaaattttaattttgcatttttcttcctttctc 508

                                                                       
Query: 245 tggaagtatttgagtagactgagcatgaaaaacatttgtctgatatttttatcagtagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggaagtatttgagtagactgagcatgaaaaacatttgtctgatatttttatcagtagat 448

                                                                       
Query: 305 acccttacatggatatgcaaagagttcacatgaataaattcccaaggacatattagaact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acccttacatggatatgcaaagagttcacatgaataaattcccaaggacatattagaact 388

                                                                       
Query: 365 ttctcaaaacttcaataattggcaagtttatgcaagctggatagaaaattcaaataaaat 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttctcaaaacttcaataattgccaagtttatgcaagctggatagaaaattcaaataaaat 328

                                                                       
Query: 425 gatttgtgatgtctccatcttcccattctgaagactattcttggctatgatttttgtgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gatttgtgatgtctccatcttcccattctgaagactattcttggctatgatttttgtgaa 268

                                                                       
Query: 485 agtggatacgcatatcatcttctacttttatactaaaactataattcacttttcactgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtggatacgcatatcatcttctacttttatactaaaactataattcacttttcactgat 208

              
Query: 545 gaa 547
           |||
Sbjct: 207 gaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_j17.g1 MSMg01no347_j17.g1 CHROMAT_FILE:
MSMg01no347_j17.g1 PHD_FILE: MSMg01no347_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:38 2005
         (505 letters)



>mm_chr10_104174842_104175746
          Length = 905

 Score =  961 bits (497), Expect = 0.0
 Identities = 503/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatttaaatgtcaaatgttaacaacagcaagctgtagatcagggcaacagcaagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatttaaatgtcaaatgttaacaacagcaagctgtagatcagggcaacagcaagctgt 260

                                                                       
Query: 61  agatcagggaaataaatgaccttaattctcttttgtaaaatcgcattgccctgataatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatcagggaaataaatgaccttaattctcttttgtaaaatcgcattgccctgataatta 320

                                                                       
Query: 121 taggatctaatttcctacttcttcacctgctgtacatatttgaacattttgcagctgttc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggatctaatttcctacttcttaacctgctgtacatatttgaacattttgcagctgttc 380

                                                                       
Query: 181 atttccatttatatttctttataatcttgctatgcgacttctgagttatctgaggcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttccatttatatttctttataatcttgctatgcgacttctgagttatctgaggcagtg 440

                                                                       
Query: 241 gccagacagatggttaacttctccagaaggtccatatataaagaactatgaactgtcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccagacagatggttaacttctccagaaggtccatatataaagaactatgaactgtcatt 500

                                                                       
Query: 301 gggcattagagaataaaaaggaatttactagacattttctgaggctttaatgagagcaat 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcattagagaatataaaggaatttactagacattttctgaggctttaatgagagcaat 560

                                                                       
Query: 361 acctgggttacttgcaattctgtaagaaaatctaccttgatcacctgacaatagaaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctgggttacttgcaattctgtaagaaaatctaccttgatcacctgacaatagaaaaca 620

                                                                       
Query: 421 gtgttaagaaatagcctttttctgtggtaggacttataaaccgtgaaaacctctgttttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgttaagaaatagcctttttctgtggtaggacttataaaccgtgaaaacctctgttttg 680

                                    
Query: 481 ttggacattatataggcaaaggaat 505
           |||||||||||||||||||||||||
Sbjct: 681 ttggacattatataggcaaaggaat 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |