BAC Information

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BAC

Clone NameMSMg01-349A12
Chromosome10 (Build37)
Map Location 100,460,271 - 100,460,803
singlet/doubletsinglet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349A12.T7 (MSMg01no349_a12.b1)MSMg01-349A12.TJ (MSMg01no349_a12.g1)
ACCAG460984AG460985
length732751
length of high quality
(start - end)
689 (41 - 729)533 (77 - 609)
definitionCHROMAT_FILE: MSMg01no349_a12.b1 PHD_FILE: MSMg01no349_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:32 2005CHROMAT_FILE: MSMg01no349_a12.g1 PHD_FILE: MSMg01no349_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTTCTG
GAGTCCACCTTCTTATTTATATATATGGGATATTAGTCCCCTATCTGATT
TAGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTACAAAGGCTTTGCAATTTTATGAGGTCCCA
TTTGTGGATTCTCGATCTTACAGCAGAAGCCATTGCTGTTCTATTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCT
ATGAGTTTCAGTGTCTCAGGTTTTATGTGGAGTTCCTTGATCCACTTAGA
TTTGACTTTAGTACAAGGAGATAGGAATGGATAATTTTGCATTCTTCTAC
ATGATAACCACCAGTTTTGACAGCACCATTTGTTGAAAATGCTGTCTTTT
TTCCACTGGATGGTTTCTGCTCCCTTTGTCAAAGGTCAAGTGACCATAGG
TGTGTGGGTCCATTTCTGGGTCTTCAATTCTATTCCATTAGTCTACTTTT
CTGTCACTATACCCGTACCATGCAGTTTTTATCACGATCGCTCTGGAGTA
CAGCTTTATGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGA
GAAGAGTTTTTGCTATCCTAGGTTTTTTGCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGGTAATGAAGGTAGGATCTCT
GTTTACAGGCAGGAACAATTTTTGGAGAGCAGGCATCATACCTGAGGACT
GTTAACACTGCATCTAATTACCATTATCCAACACTGTACCTGATAACTAT
TATCTAACACTGCATATGATGACCAGGATTTAATTGTTTATATGATGACT
ATTATCTAATATGGTATATGATGGCCATTATCTAACACTGTATATGATGA
CCATTATCTCACACTTTATATAATGAATATTACCTAACACTGTATATGAT
GACCACTACCTAACACTGACTCTGATAATCATTATCTAACCTTCGTTCTA
ATATCATTATCTGCCACAATATCTATGGATATAATTTAACACTACATATG
ATGACCATTATCTAATACTAACGTACCTGTGATGATCATTATCTAACACT
GTATCTGATGATCATTATCTTCTGAGAGTTACAATTCTTTAAATTGTAAC
TTCCAGATGAAGCACACCCATTTTCTTAGTTGATTGTAACCTGGATCATA
GAATAAAGATTGTGAAAAATATAACACCAAGTTTCCATAAAAATTCTTAT
ACTCAGTTTATAAATCCATGTCTAGAACAGGAATTGTACCAGTAAATAGA
GCTAANATTACCATAGCCATTTAGTGTCAGAATTGCCTTCCATGTTAAAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_a12.g1 MSMg01no349_a12.g1 CHROMAT_FILE:
MSMg01no349_a12.g1 PHD_FILE: MSMg01no349_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:32 2005
         (533 letters)



>mm_chr10_100460071_100461003
          Length = 933

 Score = 1023 bits (529), Expect = 0.0
 Identities = 532/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggtaatgaaggtaggatctctgtttacaggcaggaacaatttttggagagcaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attggtaatgaaggtaggatctctgtttacaggcaggaacaatttttggagagcaggcat 674

                                                                       
Query: 61  catacctgaggactgttaacactgcatctaattaccattatccaacactgtacctgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 catacctgaggactgttaacactgcatctaattaccattatccaacactgtacctgataa 614

                                                                       
Query: 121 ctattatctaacactgcatatgatgaccaggatttaattgtttatatgatgactattatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctattatctaacactgcatatgatgaccaggatttaattgtttatatgatgactattatc 554

                                                                       
Query: 181 taatatggtatatgatggccattatctaacactgtatatgatgaccattatctcacactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taatatggtatatgatggccattatctaacactgtatatgatgaccattatctcacactt 494

                                                                       
Query: 241 tatataatgaatattacctaacactgtatatgatgaccactacctaacactgactctgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 493 tatataatgaatattacctaacactgtatatgatgaccactacctaacactgaatctgat 434

                                                                       
Query: 301 aatcattatctaaccttcgttctaatatcattatctgccacaatatctatggatataatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aatcattatctaaccttcgttctaatatcattatctgccacaatatctatggatataatt 374

                                                                       
Query: 361 taacactacatatgatgaccattatctaatactaacgtacctgtgatgatcattatctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taacactacatatgatgaccattatctaatactaacgtacctgtgatgatcattatctaa 314

                                                                       
Query: 421 cactgtatctgatgatcattatcttctgagagttacaattctttaaattgtaacttccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cactgtatctgatgatcattatcttctgagagttacaattctttaaattgtaacttccag 254

                                                                
Query: 481 atgaagcacacccattttcttagttgattgtaacctggatcatagaataaaga 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgaagcacacccattttcttagttgattgtaacctggatcatagaataaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)