BAC Information

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BAC

Clone NameMSMg01-352G14
Chromosome10 (Build37)
Map Location 107,849,609 - 107,849,906
singlet/doubletsinglet
Overlap genePawr
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870, Ppp1r12a
Downstream geneEG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352G14.T7 (MSMg01no352_g14.b1)MSMg01-352G14.TJ (MSMg01no352_g14.g1)
ACCAG463545AG463546
length774806
length of high quality
(start - end)
306 (69 - 374)307 (85 - 391)
definitionCHROMAT_FILE: MSMg01no352_g14.b1 PHD_FILE: MSMg01no352_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:57 2005CHROMAT_FILE: MSMg01no352_g14.g1 PHD_FILE: MSMg01no352_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTAATATTTTCCTAACTTTCCTTTGTGAGTTAAACTGTCTTCTCTG
TTTTTTCTTTTTGCTTAATTTTTTCTTATTAGATTTTCATTTTATTTTAT
ATATATATAAATGTTTTGCCTGCATATATGTATATATGTACACCACACAC
ATGCCTGGTGCCTGCACAGGTCAGAAAATGTTGTCAGGTCTTCTGGACTG
GAGTTAGAGATGGTTGTGAGCCACCGTGTGGATGCTGGGAACAGAAGTCA
GGGCCTCTGCAAGGCAACAGTACTTACTTTTTTTTTTTAAGAGTTATTTA
TTTTATGTATGTGAGTACACTGTAGCTGTTCTTCAGGCACACCACAACAG
GGCATCAGATTCCATTACAGATGGTTGTGAGCCACCATGTTGTTGCTGTT
ATCGTAACTCCTGACCTTCTCTAGACCATGTCCCTCTTCTAACCATTGAT
TCCTTCTCTCTCTCCTCTGTCCCCGTATTCTTTTGTTAATACATCTGCTT
CACTTCTATTGCATCCCTACTTTCTCATCCCTCATTTTGCCTTCCCCTTT
CCTCCCCCATCATATTTTTTCCCATCCCAATTCACTCTTTATCCCCCCAC
CCTTCCTTCCTTCTCTCTTTCTCCTCTTTTTATATTGCCTCCCCTTTTAT
CCCCCCCCCTTTTTTTTCTTCCCCCCCTCCCCTTTCCCCTATATTCTTCC
CATTCCCCTTCGCCTCTTCTCTTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAACAGAGACATGC
TTATACTAGGATCAAGATGAAAGACTACAAAAGACCCAAGTCAAACACTG
GCTCAGCCAACAGCTACATGCAACCTCGAGCAAGTTAAAGGGGGGGGGGT
GTAACCCGGTCCTCATCTATAACATCCAGCTATTGCCTTAGAGTTGAATT
AGAAGAGGCCAGCACGAGATGAGGCCCCCTCGTTCAGTGTGGCATGTGGG
ATCAAGCCCGTGGCACTGCCCAGCGTAGGCAAGCACTTTACCATTTAATT
GCTGTGCGTGTTGGAGTTAAGAGTGGGTTAGTCTTTTCTCTCTGAGGGAA
ACGTTTCTTTCTTCCACTTTACACAAAACCTTGTTATTAACCATACCTAC
GGCATTTGCCTTTCCCTATTCTGGGTTATTTCCCTCATTACCCTTGTTCC
GTTGCGTTCCCTACTACCTTATCTTTACGAATTTCCTCCAATACAGTCCC
CTTTCTACTAGTATTCCTCCTTTTACATTTCCTTCCTTTTTCCACCTCGT
TTTCCTCCTTCTCCTCCTCTTTTCCTCCTTCTTTTTTTCCCTCTTTTCCT
TTGTTCCCTGTTTCCTTATTTCTCCCTTCCCTTTTTCACTGCCTCTCCCT
TTTCTTCCCGCCCCCCTCCCTTTCTCCCTTTCCCCCGTTGTCCGCTCCCA
TCAATCTCTTTCGTTTCCCTCTTTCTTATTTCCCCCCTTCCCTCTCTCCT
CCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_g14.g1 MSMg01no352_g14.g1 CHROMAT_FILE:
MSMg01no352_g14.g1 PHD_FILE: MSMg01no352_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:57 2005
         (307 letters)



>mm_chr10_107849409_107850114
          Length = 706

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%), Gaps = 1/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaacagagacatgcttatactaggatcaagatgaaagactacaaaagacccaagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acaaacagagacatgcttatactaggatcaagatgaaagactacaaaagacccaagtcaa 439

                                                                       
Query: 61  acactggctcagccaacagctacatgcaacctcgagcaagttaaaggggggggggtgtaa 120
           |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||
Sbjct: 438 acactggctcagccaacagctacatggaacctcgagcaagttaaacgggggaggg-gtaa 380

                                                                       
Query: 121 cccggtcctcatctataacatccagctattgccttagagttgaattagaagaggccagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccggtcctcatctataacatccagctattgccttagagttgaattagaagaggccagca 320

                                                                       
Query: 181 cgagatgaggccccctcgttcagtgtggcatgtgggatcaagcccgtggcactgcccagc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 cgagatgaggccccctcgttcagtgtggcatgggggatcaagcccgtggcactgcccagc 260

                                                                      
Query: 241 gtaggcaagcactttaccatttaattgctgtgcgtgttggagttaagagtgggttagtc 299
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggaggcaagcactttaccatttaattgctgtgcgtgttggagttaagagtgggttagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space:   207706
Effective search space used:   207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)