Query= MSMg01no352_l04.b1 MSMg01no352_l04.b1 CHROMAT_FILE:
MSMg01no352_l04.b1 PHD_FILE: MSMg01no352_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
(307 letters)
>mm_chr10_15079404_15080110
Length = 707
Score = 418 bits (216), Expect = e-121
Identities = 252/274 (91%), Gaps = 16/274 (5%)
Strand = Plus / Plus
Query: 5 gaattcagttcctacagaaggaactcagaagtctctgtctcctaatgttctgtcaggggc 64
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcagttccaacagaaggaactcagaagtctttgtctcctaatgttctgtcaggggc 264
Query: 65 ccttacttctctctctccttctctcccgccctgctttctccatctgtctgcatacctttt 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ccttccttctctctctccttctctcccgccctgctttctccatctgtctgcatacttttt 324
Query: 125 tccttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 384
Query: 185 tccttccttccttccttccttccttccattttatattgtttattattttcttttaatttc 244
||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 385 tccttccttcctt----------------tttatattgtttattatttccttttaatttc 428
Query: 245 tctctctctctctctctctctctctctctctctc 278
|||||||||||||||| |||||||||||||||||
Sbjct: 429 tctctctctctctctccctctctctctctctctc 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_l04.g1 MSMg01no352_l04.g1 CHROMAT_FILE:
MSMg01no352_l04.g1 PHD_FILE: MSMg01no352_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
(490 letters)
>mm_chr10_15204235_15205124
Length = 890
Score = 886 bits (458), Expect = 0.0
Identities = 482/490 (98%)
Strand = Plus / Minus
Query: 1 caagaacactctgaataaacaaaaaattataagtctcttcttttgtttccttgaaggggt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 690 caagaacactctgaataaacaaaaaattacaagtctcttcttttgtttccttgaaggggt 631
Query: 61 ctcatgtgcaagcactgttattcctggactatattcctacaaaagatagactaaattctg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctcatgtgcaagcaatgttattcctggactatattcctacaaaagatagactaaattctg 571
Query: 121 attgagtgtataaaggcaattaacaaagcaagctgatgcttctgaatatgggaaagtagg 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 570 attgagtgtataaaggcaattaacaaagcaagctgatgtttctgaatatgggaaagtagg 511
Query: 181 ttttcagacgtatccctcttactgaaaatataaaggcatccttggtgacataaacaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttttcagacgtatccctcttactgaaaatataaaggcatccttggtgacataaacaagaa 451
Query: 241 aatataaaaatcagtcaggcaatcaatcaaaataaaaggatattactacatccttaagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aatataaaaatcagtcaggcaatcaatcaaaataaaaggatattactacatccttaagcc 391
Query: 301 aacttggagataataggagcagataaacaatgaaaaacatagattttcacgatgtaatga 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 390 aacttggagataataggagcagatatacaatgaaaaacatagattttcacgatgtaacga 331
Query: 361 aggaattttgattttaatatttcattcaccttttctcctgaaattagactgctaatcatc 420
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 330 aggaattttgattttaatatttcatccaccttttctcctgaagttagactgctaatcatc 271
Query: 421 atgttggataagtttttaaatgaattaaaattaaatgcaaatactacaatttagttcttt 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atgttggataattttttaaatgaattaaaattaaatgcaaatactacaatttagttcttt 211
Query: 481 gaatgaatta 490
||||||||||
Sbjct: 210 gaatgaatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
