BAC Information

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BAC

Clone NameMSMg01-352L05
Chromosome10 (Build37)
Map Location 61,513,523 - 61,699,317
singlet/doubletdoublet
Overlap geneEG432466, 2010107G23Rik, Neurog3, Tspan15
Upstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164
Downstream geneTacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L05.T7 (MSMg01no352_l05.b1)MSMg01-352L05.TJ (MSMg01no352_l05.g1)
ACCAG463762AG463763
length747785
length of high quality
(start - end)
273 (49 - 321)341 (82 - 422)
definitionCHROMAT_FILE: MSMg01no352_l05.b1 PHD_FILE: MSMg01no352_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:20 2005CHROMAT_FILE: MSMg01no352_l05.g1 PHD_FILE: MSMg01no352_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,513,523 - 61,513,791)(61,698,977 - 61,699,317)
sequence
CCATTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCATGGTTTCCGGTCATAGAATCCAACATTAGGATGCAGAAC
TAAACCGTGCCTTCATCCGGGCAGTCATTTCAGAGACTGGCATCCAAATA
CTGTCATTTACAAAAGTGTAAACAAATGGAAGACATTTGGGATAAGTCTG
AAAAAGCATTTGTGAGTGAAGTTCCTCCACAGAAAGCCACAGAATAATTG
ATCCAAGAGATTAAAGGATCAAAGCAACAGAGAGAGTCACTGTGCTTGTG
GCCTGGAGACCATAAGGTCATCATATCATCATATTCCCCAAGATTGATGC
ATGGATTCACCAATCAATCATTTTCCCCAAGACTGATGTACAGATTCACC
AATCATTACATCATCTGAACACGCCCGGTCTCATCTCAAGTAGAGACTCC
ATGAAATCCCAAGGAAAAGCTCATCTGATTTTTTTCTTTCTTCCTCTTTT
GGCACAAAATTATACATGGGGCCACATACATGTTTCATCGGCTCCCGGTC
GTCTGATGTTCTAATCCGGTGGCCCCGTCACAACGATTGGGAAAACTGAT
TCCCCCAAAGCGCCCTCCCAACCCCCAACTAAAACCGTCCTTTTGTGTTA
TACCCCTTCCTTTTTCTATTTTTTCCCGCTCCCTCTTATTTTTTTCTTTG
CTTTGACCACAACTCCTCCTTTACTTTTCTATCCCCATATCATTTTN
CCCTTCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCACAGCCAAGCATGA
CCGAGTTATTCTGATGCTCCTGCTTCCACCTCCTCAGAGCTGGAATTACC
CCTTTTGCCACCAAGCACGTGGTGTAGTGCTGGGGATTGACCCAGGCCTT
GCATGCGTGCAAGGCAAGCTCCCTGCTAACTGAGCTACTTCCCAGCCCAC
GTCAGAGGCTTGATAATGCTGGAGCAGATGCGGGGTGGGAGGAAAGAGAG
TTTAGACATGTGGTACCCTACTGGGTTATGATGCAAGAGTGCCCAGTGGA
TGCCAAGCAGAGGTGGCACGTGCTCTTAGACTTCCCAGTTCTTGGAGCTA
TGTATTTAATAAATGCCAGTGCTTTATGAGTTAGTGTCTTTATGAATTAT
TTAGGGTTTCACTGCTGTGAGCAGACATCCATGAACAATGCAAGCCTTAT
ATAGGACTACCTTTTATTGCCCCTGTTTTATTAGCTCCCACGCTCTACCC
CTTTTCATTAATGTGTTTATTTCCCCCTCATTTCTCCTTTTTCCCGCCTT
CACTCCCCTCCTTCCCCTTTATTCTCCCCCTTAACCCCTTTCTCTCTCTT
TACTCCGCCTTTTTTTCTTTCCCCCCATTTATCCCCCCTCTATTCATTCT
CACCTTTTTTATTCTCCCCTCCCCTTCCCTCCTATTTCCCCCCCCTTTTC
CTCCCTTTTTCTTTCCCCTCTTTATTTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l05.b1 MSMg01no352_l05.b1 CHROMAT_FILE:
MSMg01no352_l05.b1 PHD_FILE: MSMg01no352_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
         (273 letters)



>mm_chr10_61513319_61513991
          Length = 673

 Score =  489 bits (253), Expect = e-143
 Identities = 265/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatggtttccggtcatagaatccaacattaggatgcagaactaaaccgtgcct 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatggtaggcggtcatagaatccaacattaggatgcagaactaaaccgtgcct 264

                                                                       
Query: 65  tcatccgggcagtcatttcagagactggcatccaaatactgtcatttacaaaagtgtaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatccgggcagtcatttcagagactggcatccaaatactgtcatttacaaaagtgtaaa 324

                                                                       
Query: 125 caaatggaagacatttgggataagtctgaaaaagcatttgtgagtgaagttcctccacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaatggaagacatttgggataagtctgaaaaagcatttgtgagtgaagttcctccacag 384

                                                                       
Query: 185 aaagccacagaataattgatccaagagattaaaggatcaaagcaacagagagagtcactg 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 aaagccacagaataattgatccaagagattaaacgatcaaagcaacagagagagtcactg 444

                                        
Query: 245 tgcttgtggcctggagaccataaggtcat 273
           |||||||||||||||||||||||||||||
Sbjct: 445 tgcttgtggcctggagaccataaggtcat 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no352_l05.g1 MSMg01no352_l05.g1 CHROMAT_FILE:
MSMg01no352_l05.g1 PHD_FILE: MSMg01no352_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
         (341 letters)



>mm_chr10_61698610_61699350
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcacagccaagcatgaccgagttattctgatgctcctgcttccacctcctcagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 acttcacagccaagcatgaccgagttattctgatgctcctgcttccacctcctcagagct 649

                                                                       
Query: 61  ggaattaccccttttgccaccaagcacgtggtgtagtgctggggattgacccaggccttg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 648 ggaattaccccttttgccaccaagcacgtggtgtagtactggggattgacccaggccttg 589

                                                                       
Query: 121 catgcgtgcaaggcaagctccctgctaactgagctacttcccagcccacgtcagaggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 catgcgtgcaaggcaagctccctgctaactgagctacttcccagcccacgtcagaggctt 529

                                                                       
Query: 181 gataatgctggagcagatgcggggtgggaggaaagagagtttagacatgtggtaccctac 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 528 gataatgctggagcagatgcggggtgggaggaaagagagtttggacatgtggtaccctac 469

                                                                       
Query: 241 tgggttatgatgcaagagtgcccagtggatgccaagcagaggtggcacgtgctcttagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgggttatgatgcaagagtgcccagtggatgccaagcagaggtggcacgtgctcttagac 409

                                                    
Query: 301 ttcccagttcttggagctatgtatttaataaatgccagtgc 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcccagttcttggagctatgtatttaataaatgccagtgc 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)