BAC Information

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BAC

Clone NameMSMg01-352L13
Chromosome10 (Build37)
Map Location 56,786,270 - 56,786,845
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L13.T7 (MSMg01no352_l13.b1)MSMg01-352L13.TJ (MSMg01no352_l13.g1)
ACCAG463778AG463779
length757777
length of high quality
(start - end)		580 (48 - 627)95 (78 - 172)
definitionCHROMAT_FILE: MSMg01no352_l13.b1 PHD_FILE: MSMg01no352_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:22 2005CHROMAT_FILE: MSMg01no352_l13.g1 PHD_FILE: MSMg01no352_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGATGGCGTTTATTTTGCAGATTCTAGATAACATCTTTTGA
GAAATTGCTTGTATTTCCAACAATCTGATAAGAAAAAGAGAAAACATTTT
CTTTTTTAGACTAAGGGATCAATTATAAATGGTGAGGTATATATAGGGCA
TCTATTTGCTAAGCTTCCCAGAGTAGCAGGTATAATTGCAAATTTCTTAT
TCCAAATGTGCTCATTCTAAGAACAAAAGAGTAAGTTCATCAAACTGGAG
CACAAGGCACCATCATAAAGTTCATATACAGAACATACACTATTCTCAAG
AACTCAGGAGACAGTTTCAAGGACTGTCTATATGTTGAGTTATGAATTAT
GTGTCAAGTAGTTTAAAAAGAAATATTGCATTAAAATCTGCTATTATCAC
AGTGGTATAAAGTTAAAAATGTTTAGCTGGAGAAAGACTGGGAGATATCA
TAAAGTTATAGACACGGATAATCACTTATCCTTTACAATGCTAGACATCA
AGCTAGAACTTCATGCATATTCACAAATGATCTAACTTCACTGCACTCCC
AGCCCATCAATATATGTTTGAACTACCATTAGATCAAAGAATAAACTACC
GAAATATTAAAGTGTTAGAAGCCATCATATCAAAGCTAGTATTCAGCAAA
AACAGTACAAAGGGGCGGAATTAGCAAGATAAAACCCTACTTAGAAATAT
TTCCTAN

NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATATGAAGCGGAACTAATT
CCACCTTATTTCTCACTTGGAGCATGCCTGTAAAGTTTCTGAAGTGCATG
CAGCATGTGCATGTGTGTGNGNGNGNNNNNNCNNNNNNNNNNNNNCCCNC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCC
CCTTTTCCCCCCCCCCCCTCCCNCCNNCTCCCCCCCCCCCCTCCTCCCCC
CCCCCCCCCCCTCTCTCCCCTCTTTTCTCTTCTCTTTCCCCCTTTTCTCC
CCCTCCCCCCCTTCTCTTTCCCTCCCCCCCCCTCCTCCCCTTCCCCCCCC
TCCCTCCCCCTCCCCCCCCCCCCCTCCCCCCCCTCCCTTCTCCCCTTTTC
TTTTCCCCCTCTCCCCCCCCCCCCCCCCCTCTCCCCTCCTTTCCCCCCCC
CCCCCCCTCTCCTTTCCCTCCCCCCTTTCCTTTTCCCTCCCCCCCTCCCC
TTTCCCCTTCCCCCTTTTCCCCCCCCTCCTCCCCTCTTTCCCCCTCCCCC
CCCCCCCACCCCTTTCCCCCCACCCCCTCCCCCCCTCCCCCTCCTCTCCC
CCCCTTTTTTTCATCTCCCTCCTCTACTCCCCCTTCATCCTATATCCACC
ATATTTACTCCCTCCCCTACCCTTTTCTCACCCCCCCCATAACCCCCCCC
CTCTTCTCCCTCCCCTCTCCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l13.b1 MSMg01no352_l13.b1 CHROMAT_FILE:
MSMg01no352_l13.b1 PHD_FILE: MSMg01no352_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:22 2005
         (580 letters)



>mm_chr10_56786067_56787045
          Length = 979

 Score = 1046 bits (541), Expect = 0.0
 Identities = 568/577 (98%), Gaps = 1/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagatggcgtttattttgcagattctagataacatcttttgagaaattgctt 63
           |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttatatggagtttattttgcagatgctagataacatcttttgagaaattgctt 263

                                                                       
Query: 64  gtatttccaacaatctgataagaaaaagagaaaacattttcttttttagactaagggatc 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 gtatttccaacaatctgataagaaaaagagaaaacattttctcttttagactaagggatc 323

                                                                       
Query: 124 aattataaatggtgaggtatatatagggcatctatttgctaagcttcccagagtagcagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattataaatggtgaggtatatatagggcatctatttgctaagcttcccagagtagcagg 383

                                                                       
Query: 184 tataattgcaaatttcttattccaaatgtgctcattctaagaacaaaagagtaagttcat 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 tataattgcaaatttcttattccaa-tgtgctcattctaagaacaaaagagtaagttcat 442

                                                                       
Query: 244 caaactggagcacaaggcaccatcataaagttcatatacagaacatacactattctcaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caaactggagcacaaggcaccatcataaagttcatatacagaacatacactattctcaag 502

                                                                       
Query: 304 aactcaggagacagtttcaaggactgtctatatgttgagttatgaattatgtgtcaagta 363
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 aactcaggagacagtttcaaggactgtctatatgttgagtcatgaattatgtgtcaagta 562

                                                                       
Query: 364 gtttaaaaagaaatattgcattaaaatctgctattatcacagtggtataaagttaaaaat 423
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtttaaaaagagatattacattaaaatctgctattatcacagtggtataaagttaaaaat 622

                                                                       
Query: 424 gtttagctggagaaagactgggagatatcataaagttatagacacggataatcacttatc 483
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 623 gtttagctggagaaagactgggagaaatcataaagttatagacacggataatcacttatc 682

                                                                       
Query: 484 ctttacaatgctagacatcaagctagaacttcatgcatattcacaaatgatctaacttca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctttacaatgctagacatcaagctagaacttcatgcatattcacaaatgatctaacttca 742

                                                
Query: 544 ctgcactcccagcccatcaatatatgtttgaactacc 580
           |||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgcactcccagcccatcaatatatgtttgaactacc 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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