BAC Information

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BAC

Clone NameMSMg01-352M02
Chromosome10 (Build37)
Map Location 41,741,255 - 41,911,245
singlet/doubletdoublet
Overlap geneLOC624784, Foxo3a
Upstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik
Downstream geneLace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M02.T7 (MSMg01no352_m02.b1)MSMg01-352M02.TJ (MSMg01no352_m02.g1)
ACCAG463803AG463804
length753805
length of high quality
(start - end)
468 (51 - 518)219 (84 - 302)
definitionCHROMAT_FILE: MSMg01no352_m02.b1 PHD_FILE: MSMg01no352_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005CHROMAT_FILE: MSMg01no352_m02.g1 PHD_FILE: MSMg01no352_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,741,255 - 41,741,721)(41,911,027 - 41,911,245)
sequence
TTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCAAACTTACAGCTCATGCGATCCTTGCATACAAATTCA
AAAGCACCGATGCGTTTAAATGTAATTCTGCAGAACTTCACAGCTCGAGG
AGAATCCACTAAATTCATGGAACTTGATAGAAAGCACCAACTCAAAGGGT
CACACCACAAACCTCTGTTTGCTGGGGTCAGCAGTTGCCAGTGCACCTAA
GAATGATGACGCGTTTACACACTTTACTCATAACACGTTGCTTCTGCCAA
CCTGGCCATGAGCTGGCTGAGCTCAAATACTTGGCAGCGATCCTAATGAG
GAAGGCTCTATTCAGTTACCACATCAGTACAAACGGATGCAACCATTAGT
GTTTCGTTGGAGGGAAGGGGGGTCCTAGTGTTCCAGAGTATGGAGGGCTC
TTCGAGAGGCTTCATCCTATGCATCTGCTGCTGTGCCTCGTCCATGTTAA
GTCTTTAAAGAGAAGTAGAAAACAGCCAACCTCACCTGTGAGACATTACT
GCCCGTGCAGAGTCCTTTGACCGCACCCACCTGAAAATAACACATAGTTC
CACCTCAAGGATCTTACACTACAAGTCCTGAGGTGTGCAAACTTCGCTTA
CCAATCCCCTGGCAATGGTATTTTTCCCCCGCGTTCTCTCCCCCCCCTCC
TTTTCGTCCCCCACCCCCCCCAGTATGGTTCACCGTCGCCCCACCTCCCC
AAA
NNGGACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTGGGATCTCAGA
GTGTGGGTGGGCATCCTGGGCACTTGATGTTTGTGCCAGATGTAAGGCAC
AGGTGGAGAACATCTGGGGAAGGCAGAGTGAAGGGCTGTGCGGCAGCTCA
CCTGGATAGGAGGAGAGCAGGCTGGGCGGAGCGTCCCCAAGGTGACCCCC
AGGAGAGAGTGGTGGAGAGAGTGGAGGATCCCGCAGGTCTTTGCCACTTA
AACTTTGGTGTACAATAGTTGAGGGTGATTATTTTCTACATCCNNCACAT
CCTCTTACAAAGTAATTCTTNTTGTTTGGCTGAGGTGCATCTTTGTTGAG
GCTCTTATTGGTCCNNNATNNNNNCGCCCCCCCTTTCATCNCCTATCCCT
CCCCTCTCACCCTATTACCTTTCGCTNNCTCCCCCTAGTCCTTTTCGNNN
ATTCTTCCATCGGCGGATCCTCTGCGTTCTATTTTCTCAACTCATATATC
TAGTTTTCTCCTNTTGCTTTCCACGTCTTTTCCCCNNNNGTGCGCATTGG
GATCTTTAATACTATCTTCTTGTTACTGCGACTGTGCTTTTAGCGAGGCN
NNGGGCTTTAGTCCCTCTCGTTAGTCGTACCCNNAGCCGCTTTCTCTCCC
CCACCCTCTCCNGTTTATCTCCTACCCCTTTTTTCTCCTCTCTTTGCTAT
TTATCATTTTTCCACGCNATCCAANNNNNCACCCCTTCCTATTTCGTCTC
CGNAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m02.b1 MSMg01no352_m02.b1 CHROMAT_FILE:
MSMg01no352_m02.b1 PHD_FILE: MSMg01no352_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:25 2005
         (468 letters)



>mm_chr10_41741051_41741921
          Length = 871

 Score =  806 bits (417), Expect = 0.0
 Identities = 454/467 (97%), Gaps = 3/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaaacttacagctcatgcgatccttgcatacaaattcaaaagcaccgatgcg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaaactgagagctcatgcgatccttgcatacaaattcaaaagcaccgatgcg 264

                                                                       
Query: 65  tttaaatgtaattctgcagaacttcacagctcgaggagaatccactaaattcatggaact 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaatgtaattctgcagaactccacagctcgaggagaatccactaaattcatggaact 324

                                                                       
Query: 125 tgatagaaagcaccaactcaaagggtcacaccacaaacctctgtttgctgggg-tcagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 tgatagaaagcaccaactcaaagggtcacaccacaaacctctgtttgctggggctcagca 384

                                                                       
Query: 184 gttgccagtgcacctaagaatgatgacgcgtttacacactttactcataacacgttgctt 243
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 gttgccggtgcacctaagaatgatgacgcgtttacacactttacccataacacgttgctt 444

                                                                       
Query: 244 ctgccaacctggccatgagctggctgagctcaaatacttggcagcgatcctaatgaggaa 303
           |||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 445 ctgccaacctggtcatgagctggcagagctcaaatacttggcagtgatcctaatgaggaa 504

                                                                       
Query: 304 ggctctattcagttaccacatcagtacaaacggatgcaaccattagtgtttcgttggagg 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 ggctctattcagttaccacatcagtacaaacggatgcaaccattagtgtttcgtcggagg 564

                                                                       
Query: 364 gaaggg--gggtcctagtgttccagagtatggagggctcttcgagaggcttcatcctatg 421
           ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 gaagggaggggtcctagtgttccagagtatggagggctctttgagaggcttcatcctatg 624

                                                          
Query: 422 catctgctgctgtgcctcgtccatgttaagtctttaaagagaagtag 468
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catctgctgctgtgcctcgtccatgttaagtctttaaagagaagtag 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 871
Length adjustment: 10
Effective length of query: 458
Effective length of database: 861
Effective search space:   394338
Effective search space used:   394338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no352_m02.g1 MSMg01no352_m02.g1 CHROMAT_FILE:
MSMg01no352_m02.g1 PHD_FILE: MSMg01no352_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:25 2005
         (219 letters)



>mm_chr10_41910827_41911445
          Length = 619

 Score =  385 bits (199), Expect = e-111
 Identities = 214/219 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttgggatctcagagtgtgggtgggcatcctgggcacttgatgtttgtgccagatgt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 419 agtgttgggatctcagagtgtgggtaggcatcctgggcacttgatgtttgtgccagatgt 360

                                                                       
Query: 61  aaggcacaggtggagaacatctggggaaggcagagtgaagggctgtgcggcagctcacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 359 aaggcacaggtggagaacatctggggaaggcagagtgaagggctgtgcggtggctcacct 300

                                                                       
Query: 121 ggataggaggagagcaggctgggcggagcgtccccaaggtgacccccaggagagagtggt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggataggaggagagtaggctgggcggagcgtccccaaggtgacccccaggagagagtggt 240

                                                  
Query: 181 ggagagagtggaggatcccgcaggtctttgccacttaaa 219
           ||||||||||||||||||||||||||||||||| |||||
Sbjct: 239 ggagagagtggaggatcccgcaggtctttgccaattaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)