BAC Information

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BAC

Clone NameMSMg01-354H13
Chromosome10 (Build37)
Map Location 64,291,528 - 64,292,028
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354H13.T7 (MSMg01no354_h13.b1)MSMg01-354H13.TJ (MSMg01no354_h13.g1)
ACCAG465091AG465092
length751763
length of high quality
(start - end)
442 (46 - 487)501 (75 - 575)
definitionCHROMAT_FILE: MSMg01no354_h13.b1 PHD_FILE: MSMg01no354_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:37 2005CHROMAT_FILE: MSMg01no354_h13.g1 PHD_FILE: MSMg01no354_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAACATACCAAAGAAAGGCTACATTAGATCGTGGTAAACAGCC
AAATGAAAGAAAGGCTACATTAGATCGTGGTAAACAGCAATCTCGGCCAG
TGAATCAATTTCCAGACTTGAGACAGTTTGCAGATCCAGAACCCCTTGAA
TGAAGGGGTGGCCAGGTTCCACTGAGGAAGGATCTTGATAAGACACTCAA
AGGTTTTGCTGTTACCCTTTCTCCAGTTCTTCCCCAGAGGGACCTACGGC
CTTTTACAAGGGTAACTGTACACTGGGGAAAAGGAAATAATCAGACTTTT
CGGGGTCTGCTGGATACTGGTTCTGAGTTGACACTGATCCCAGGGGATCC
CAAGAAACATTGTGGACCTCCAGTTAAAGTAGGGGCTTATGGAGGGCAGG
TGATTAATGGAGTTTTGACTGATGTCCGACTCACAGTAGGTCCAGTAGGT
CCCCGGACACATCCTGTGGTGATTTCCCCAGTTCCAGAATGTATAATTGG
GATAGATATACTCAGAAACTGGCAGAATTCTCATATTGGTTCCCTGAACT
GTAGAGNGANNCCTATTATGGTTGGAAAGGTCAAATGTAAGCCTTTANAT
GTGCCTCTGCTCTCTTAAATAGTGAATCTGTTGNCGTTCTCGTATTCCTG
NAGTCNNTGCTTATNTTTCTGCCACTATCAAGGACTTGTATTATGTTTGG
N
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATATGAGAAACAACCAATTAATGC
CCAGAACCATTAAACACTCTCTAGATAATTGAACCCCCCTTTGTTTTGTT
CAGATTTAGATACAGTCCAGTTTAAAGAAGGTAATTTATCCACACCATTC
CTTAGAATGTGTTCTAAGGTGAACACTTGGAAAAGCCACTTAAGATCATT
AAAATAAATGTCAATTGAAAATCGCCTTCATAGGCTTCATAGGAAAAACA
ATGTATGCAGAATTATATTGAATTCTATTTAACATAGTCATAATAGGAAG
GCATAGTTATAAAACATAGCTACAGGTGTTTAGTAAGCACCATGTCCAGG
CAGCATACTATTTGGGGATACTGCAGTAAGAGATATTTAATGGGCCGTCT
AAGGTTGTATTCTGAGAATACATTTGAATTAAATTAGAGGGATCTTAGGT
TTGTACAAATATTTGTGAAAATTTTTATAGGGATTAGATGATAGTGCAGG
AAGAAGAAAACAAAAGAGAAACAATCTTGGTAAATCACAGCTCTGTATGT
AGGTTTAGCCCTTACCACATCTCTGCACAATTGAGCTGCATAATACCTTT
TGGGCTTAGGTATATTACTGAGATTCTGGTCTGAGAAAAGAAAGTTTTAT
AGGGTCACAAATTGACCGGGGCCCTCATTGCTTGGGCCGAATCCAATCTG
ATTTGCTTTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_h13.g1 MSMg01no354_h13.g1 CHROMAT_FILE:
MSMg01no354_h13.g1 PHD_FILE: MSMg01no354_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:37 2005
         (501 letters)



>mm_chr10_64291328_64292228
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatgagaaacaaccaattaatgcccagaaccattaaacactctctagataattgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatatgagaaacaaccaattaatgcccagaaccattaaacactctctagataattgaac 260

                                                                       
Query: 61  ccccctttgttttgttcagatttagatacagtccagtttaaagaaggtaatttatccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccctttgttttgttcagatttagatacagtccagtttaaagaaggtaatttatccaca 320

                                                                       
Query: 121 ccattccttagaatgtgttctaaggtgaacacttggaaaagccacttaagatcattaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattccttagaatgtgttctaaggtgaacacttggaaaagccacttaagatcattaaaa 380

                                                                       
Query: 181 taaatgtcaattgaaaatcgccttcataggcttcataggaaaaacaatgtatgcagaatt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 taaatgtcaattgaaaatcgccttcataggcttcatagggaaaacaatgtatgcagaatt 440

                                                                       
Query: 241 atattgaattctatttaacatagtcataataggaaggcatagttataaaacatagctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattgaattctatttaacatagtcataataggaaggcatagttataaaacatagctaca 500

                                                                       
Query: 301 ggtgtttagtaagcaccatgtccaggcagcatactatttggggatactgcagtaagagat 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ggtgtttagtaagcaccatgtccaggcagcataatatttggggatactgcagtaagagat 560

                                                                       
Query: 361 atttaatgggccgtctaaggttgtattctgagaatacatttgaattaaattagagggatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttaatgggccgtctaaggttgtattctgagaatacatttgaattaaattagagggatc 620

                                                                       
Query: 421 ttaggtttgtacaaatatttgtgaaaatttttatagggattagatgatagtgcaggaaga 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagatttgtacaaatatttgtgaaaatttttatagggattagatgatagtgcaggaaga 680

                                
Query: 481 agaaaacaaaagagaaacaat 501
           |||||||||||||||||||||
Sbjct: 681 agaaaacaaaagagaaacaat 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)