BAC Information

Click to search

BAC

Clone NameMSMg01-354P12
Chromosome10 (Build37)
Map Location 114,931,995 - 114,932,503
singlet/doubletsinglet
Overlap geneLgr5
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
Downstream geneA930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354P12.T7 (MSMg01no354_p12.b1)MSMg01-354P12.TJ (MSMg01no354_p12.g1)
ACCAG465469AG465470
length774758
length of high quality
(start - end)
358 (74 - 431)518 (79 - 596)
definitionCHROMAT_FILE: MSMg01no354_p12.b1 PHD_FILE: MSMg01no354_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:17 2005CHROMAT_FILE: MSMg01no354_p12.g1 PHD_FILE: MSMg01no354_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACAGATATGCCGAAACATGTTTAGTGACCCCTGGAAGTGAAC
ATCATAACACGGAAAGCAAGCAAATGGGAAATAAACTATTTCAAAATATA
TTTGTCCTGTGGCATTTACAAAGGATTTGCTCCATAATTTTTCAGAGATA
CCAACTACTATAGATGCCCATGTCCTGTCTATAGAACACCATGCTATGCA
CATACAGGTAACACACATTCTCCCGTATGCTTAGATTCTCCTCTATATTA
TTTATAATACCTAACATAGTAGAAGTATTATGCAGTCAGTTTTTTGCTAT
ACTGCTTATGACATAAAAACTACATATGCTCATTGCAGACATAAAATTGT
ATTTATTTTTTGATGTTTTTCAAATTCAATATTTCATATCTTAAGTTTGA
TTTGGCATTTGGCATTTTGATAGCCAAATAATCAACAAAGTTAGTTAATT
GGCTAATTACCCAAACACATAACCATGGTATATGAAAGGCCATATGTTAT
CTCTCCATAAGGCTCTTGGTCTGTAATTTCTTCACTGTCACTGACTCTAG
ATTTTTTTTTTGACTTTTTGGACACCCACCTTTTTTTCTTTTCTTTCTGC
CCATTCCATATTTTCCACTATTATTCCTTCTTTTTTTGGAATAACCTCCT
TAATGGCTTTTTTCCCCCTTTTACTCGTAAGGATCACTTATTCTACTCTA
CACCCCCTTTTTTCTTCTCTCCTC
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAAAAAAAATACTAATGGT
CCTGTGGACAGGATTATCTAAGTGAATGTTTGCTCTGGAGACACCAACAT
ATTCAGGCTTTTGACTGAAGACGTCATTAAACATCTGCCTGGAACCACCA
AAGGCTAAGGCCAAGGCTTCTAGTCCGTTCAACCCCACCAGCTCCTGGAT
AACACAGGTCAGGTCCTTCTCAATTGAGATTCATGGTTTGCAGTTACAGC
TGTACTTACAGGGATTGAAGGCTTCTCAAATTCTGTAGCGCTTCCTCCGG
AACCTGTCTCAGCTGGTTGTTCTGCAGCATACTGTCCATGCAAACAACAA
CAACAACAATAACAACAACAACAACAACAACAACAACAACAACAACAAAG
ACAGAAAAGAAAATTAACAATCGCTGTCCCCAACACAGTAGCATCAGACA
CTGTCCCAGGGTCTTAAAAACATCAGAGCATCACGCACAACAGGTTATGG
GGGGAGGTTAAATTCCTGGGGGTGTGTGAGTGCAAATGATAAATAAATAA
ATCCTACAAAACCCCCAATTATCAATTAAGCCCTCATCTCTCATCCGGTT
ACCTTCATATGTGAGAACGAGAGCAGGTTATCTCGAGCCCCCAGTGAGTT
AATTGGAAAATTCTGTTTTTTGTTCTAGATGTTCCACTGCCAAACAAAAC
TCGTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_p12.g1 MSMg01no354_p12.g1 CHROMAT_FILE:
MSMg01no354_p12.g1 PHD_FILE: MSMg01no354_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
         (518 letters)



>mm_chr10_114931795_114932712
          Length = 918

 Score =  955 bits (494), Expect = 0.0
 Identities = 508/518 (98%), Gaps = 9/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaaaaaaaatactaatggtcctgtggacaggattatctaagtgaatgtttgctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaaaaaaaatactaatggtcctgtggacaggattatctaagtgaatgtttgctctgg 260

                                                                       
Query: 61  agacaccaacatattcaggcttttgactgaagacgtcattaaacatctgcctggaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaccaacatattcaggcttttgactgaagacgtcattaaacatctgcctggaaccac 320

                                                                       
Query: 121 caaaggctaaggccaaggcttctagtccgttcaaccccaccagctcctggataacacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaggctaaggccaaggcttctagtccgttcaaccccaccagctcctggataacacagg 380

                                                                       
Query: 181 tcaggtccttctcaattgagattcatggtttgcagttacagctgtacttacagggattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggtccttctcaattgagattcatggtttgcagttacagctgtacttacagggattga 440

                                                                       
Query: 241 aggcttctcaaattctgtagcgcttcctccggaacctgtctcagctggttgttctgcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcttctcaaattctgtagcgcttcctccggaacctgtctcagctggttgttctgcagc 500

                                                                       
Query: 301 atactgtccatgcaaacaacaacaacaacaataacaacaacaacaacaacaacaacaaca 360
           |||||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 501 atactgtccatgcaaacaacaacaacaacaa---------caacaacaacaacaacaaca 551

                                                                       
Query: 361 acaacaacaaagacagaaaagaaaattaacaatcgctgtccccaacacagtagcatcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acaacaacaaagacagaaaagaaaattaacaatcgctgtccccaacacagtagcatcaga 611

                                                                       
Query: 421 cactgtcccagggtcttaaaaacatcagagcatcacgcacaacaggttatggggggaggt 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 612 cactgtcccagggtcttaaaaacatcagagcatcacgcacaacaggttttggggggaggt 671

                                                 
Query: 481 taaattcctgggggtgtgtgagtgcaaatgataaataa 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 672 taaattcctgggggtgtgtgagtgcaaatgataaataa 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)