Query= MSMg01no355_p14.b1 MSMg01no355_p14.b1 CHROMAT_FILE:
MSMg01no355_p14.b1 PHD_FILE: MSMg01no355_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:34 2005
(552 letters)
>mm_chr10_55815750_55816701
Length = 952
Score = 951 bits (492), Expect = 0.0
Identities = 524/540 (97%), Gaps = 10/540 (1%)
Strand = Plus / Minus
Query: 13 taatattatttgacattgttttttcatgactacttcttttccccactaatggttactata 72
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 806 taatattatttgacattgttttttcatgactatttc-tttccccactaatggttacaata 748
Query: 73 atttttatttttaatcgtatttaatttttattaatattttattatcaagacctgcatcac 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atttttatttttaatcgtatttaatttttattaatattttattatcaagacctgcatcac 688
Query: 133 taaacaacattttaatttgttgcttcttagactttatgctaatgatagcatagactctat 192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 687 taaacaacattttaatttgttgcttcttagactttatgctaatgatagcatagactatat 628
Query: 193 gtcctattgtaacaggcaatttctatatagccttatgttatttaaattaacgttacatgt 252
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 gtcctattgtaacaggcaatttctatttagccttatgttatttaaattaacgttacatgt 568
Query: 253 ttttgaagtttaattatcataaaatattccattataggactatgccatgttttgcctata 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttgaagtttaattatcataaaatattccattataggactatgccatgttttgcctata 508
Query: 313 aatgtatattaaaggtgtttcctatttaggtttgtgttaacaaaggccttttaaaatttc 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aatgtatattaaaggtgtttcctatttaggtttgtgttaacaaaggccttttaaaatttt 448
Query: 373 ctattttattcattataactttgtctttccttatataaatatcaagtaattttagttgct 432
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 447 ctattttattcattataactttgtttttccttatataaatatcaagtaattttagttgct 388
Query: 433 ctatagccctatgctaggttacaagtagtggcagggaaaatcctttgttcttaaaaaaga 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctatagccctatgctaggttacaagtagtggcagggaaaatcctttgttcttaaaaaaga 328
Query: 493 atcaataacagcaacaacaataaaaccctgcctcctttctgatctcttgccacataagat 552
||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcaa---------caacaataaaaccctgcctcctttctgatctcttgccacataagat 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_p14.g1 MSMg01no355_p14.g1 CHROMAT_FILE:
MSMg01no355_p14.g1 PHD_FILE: MSMg01no355_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:34 2005
(477 letters)
>mm_chr10_55638963_55639839
Length = 877
Score = 891 bits (461), Expect = 0.0
Identities = 473/477 (99%)
Strand = Plus / Plus
Query: 1 acttctctgcaaaaattaattagtagtgattttattctggcccatgatacaggggcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctctgcaaaaattaattagtagtgattttattctggcccatgatacaggggcacat 260
Query: 61 acaaaaagttagggctcccagtgttggtcaaacatcatctaataaaacaagaaaattaat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acaaaaagttagggctcccagtgttggtcaaacaacatctaataaaacaagaaaattaat 320
Query: 121 taactaaaatttattagccccacatttatttaaaacatctcttaaaataagaagaaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactaaaatttattagccccacatttatttaaaacatctcttaaaataagaagaaaatt 380
Query: 181 tatttcatgatgctgagccttgtgaggggggagagatggagcagtggaagatgagcttac 240
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttcatgatgctgaaccttgtgaggggggagagatggagcagtggaagatgagcttac 440
Query: 241 gctaatggacacaatgaatattctttaacctaaaataatatatagaaccttagaaaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaatggacacaatgaatattctttaacctaaaataatatatagaaccttagaaaatga 500
Query: 301 tatcgaataaaatgtaagctccatcactcacatccgcagggcttatgaaagaaaacagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcgaataaaatgtaagctccatcactcacatccgcagggcttatgaaagaaaacagat 560
Query: 361 gtttctggagcattaatgtactcttcaaatctaccattcagtcattctagcaagaatact 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttctggagcattaacgtactcttcaaatctaccattcagtcattctagcaagaatact 620
Query: 421 gcagatgggagctcagggcccagttaactacaactcataattctaagtttaacttca 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagatgggagctcagggcccagttaactacaactcataattctaagtttaacttca 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
