BAC Information

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BAC

Clone NameMSMg01-356O22
Chromosome10 (Build37)
Map Location 54,169,995 - 54,170,236
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356O22.T7 (MSMg01no356_o22.b1)MSMg01-356O22.TJ (MSMg01no356_o22.g1)
ACCAG466957AG466958
length870779
length of high quality
(start - end)
---244 (66 - 309)
definitionCHROMAT_FILE: MSMg01no356_o22.b1 PHD_FILE: MSMg01no356_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:48 2005CHROMAT_FILE: MSMg01no356_o22.g1 PHD_FILE: MSMg01no356_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTTCATTATTCACATGTACGATGGTTGATGACCGAACGATGAT
GATGGCTATGCCCTGCTAACGTGATCTGAAATCCTCTTTCCCCAGGCTGG
TTGCCTATGTATCTCTTGACCGTCCTCGTTGAGCCCATGTGCAACACTGC
AGCCCATATACCTATGTTTTCTGATTGGTCCGCCCCTCTTAGGCGGGCGT
CCTTATTTCACCTTACTGCACTGGCATGGCCATGTGCAGATCTATCCCCC
CAGTTTGCCAATTCACTAACTCACAGCCTCCTCCCGCCGAGGGACTTCTC
TAAGGTGCCCCTTGCGCTTGTACGTCTGAGGAAAGCTGGCGATAACTTTC
CTGGACGTACTCTAGACGTCCATTTCCGCGTATGTGAGGCGAGATTGACG
TATGCGGAAAACGTCCGTAAGTCTCCCCCTGAGCTTTGAGGAAAGCAATA
TCTAGTGCGAGCTCGTGAGACTGGCATGGCGGTGAATGTGCCCCCTTCTC
CCCGCACAGTTGGCGATTGAGTGGTTTGATCCTCCGCGTGTACGACTGCC
GTTTCATGAATGAGTACCTCTTCTATTACCACAAGCCCCGCTGCTCTGTA
CCGCAGACCGTCTAACTATTTTGATTCGAGTCCTGCTACTTGCCCGTCGT
CCTCGATACACCATAATCCTACTGTCTCCTATCTCTAGGTCGCGGCAAAT
CTGATAATCCCACGCATAAGTCACAGTTGTGATCTCTCGTTGAATTTCAG
CATAGTGTCTCCATTGTCCGCGCCTGTGTAACGCCCGACTTGGGCACCGT
AATGTACTGCGTTCCGCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTGTTAGCAGTGAAAATGGCAGCAATAACCACGC
CCCTTCTATGCTGCCTAAACACCCTAAACCACTGACTCATCATTGCCTGA
GCATATGATGGTCTGATTTCAAAAAGAAGAGACGCATTATGCTTGTTCAA
CTCTAGATTTGCAGATATCTCAGGGAAAAGCTGATTGTGGAATCCTGGTT
GATTTCCATAACTAAAGCAATGTGATTAAGTTCCTATAGGCTTAAGATAA
TCACCCATTTTTTTATGTTCTTGTAATCAGGTTGGAGTTTCAATCAATGA
AGCTCTTTTTCACACTATTGACTGCCTAAAGAACTGGAACACCAAAAAGA
CAAGCACCACAGTGAATCTTATCCAAGGCTTCTGAGACTCTATGCTTTCT
ACTGGAGTAACACTACAGTAGAATCTAGCACACCACAGGCATTCCATTAC
TAATGCATGATTGCCAGGCGTATTTTTACTACGACAACCTTTATGACTAT
ACTTGTTCTTTTATTCTTCTCTCATTGCCAATGCTCTTTTCTTTGAAACA
GATTCTTCCCTCTTCCTAATTAACCTGTCTGATCTTTCTCATCTTTCTAT
TCCTTCTCCACATTTTCCCACGCGTTCCTATTTTCGCCCTTTTTTCACCC
CGTTCCTCCCACCCTTTATTTTCCTCCCTTACTTTCACCTCTTTTCCGGT
TTCCCTTGTTCTCTCTACCCTCTTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_o22.g1 MSMg01no356_o22.g1 CHROMAT_FILE:
MSMg01no356_o22.g1 PHD_FILE: MSMg01no356_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:48 2005
         (244 letters)



>mm_chr10_54169795_54170438
          Length = 644

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgttagcagtgaaaatggcagcaataaccacgccccttctatgctgcctaaacaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtgttagcagtgaaaatggcagcaataaccacgccccttctatgctgcctaaacaccct 383

                                                                       
Query: 61  aaaccactgactcatcattgcctgagcatatgatggtctgatttcaaaaagaagagacgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 382 aaaccactgactcatcattgcctgagcatatgatggtctgatttcaaaaagaagagacac 323

                                                                       
Query: 121 attatgcttgttcaactctagatttgcagatatctcagggaaaagctgattgtggaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attatgcttgttcaactctagatttgcagatatctcagggaaaagctgattgtggaatcc 263

                                                                       
Query: 181 tggttgatttccataactaaagcaatgtgattaagttcctataggcttaagataatcacc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggttgatttccataactaaagcgatgtgattaagttcctataggcttaagataatcacc 203

             
Query: 241 ca 242
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)