BAC Information

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BAC

Clone NameMSMg01-357A20
Chromosome10 (Build37)
Map Location 101,096,787 - 101,097,181
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357A20.T7 (MSMg01no357_a20.b1)MSMg01-357A20.TJ (MSMg01no357_a20.g1)
ACCAG467047AG467048
length759785
length of high quality
(start - end)		579 (40 - 618)395 (72 - 466)
definitionCHROMAT_FILE: MSMg01no357_a20.b1 PHD_FILE: MSMg01no357_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:57 2005CHROMAT_FILE: MSMg01no357_a20.g1 PHD_FILE: MSMg01no357_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATCTCTATGCCACATTTTTTAATGGGGTTATTTGGTTTTCTGGA
GTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTA
ATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
GTATTAAGAGTGTCTTTTGTCTTACAGAAACTTTGCAGTTTTATGAGGTC
ACATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTCCCCATATCTTTGAGGCGTTTCCCCACTTTCTCC
TCTATAAGTTTTAGTATCTCATTTTAAGTGGAATTCCTTGATCCACTTAG
ACTTGACTTTAGTACAAGGAGATAAGAATGGATCAATTCTCATTCTTCAA
CATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTT
TTTCCACTGGATGGTTTTATCTCCCTTGTCAAAGATCAAATGACCATAGG
TTTGTGGGTTCATTTCTGAGTCTTCAATTCTATTCCATTGGTCTACCTGT
CTGTTGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTA
CAGCTTTAGGTCAGGCATGGTGATTCCCCCAAGATTCTTTGATCATTTGA
AAGAAGTTTTACTATCCCAGCTTTTTTGTTTTCCCCAAAGAAATTGCAGA
TTGGCCTTT

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTAGGTAATTTGTTAAAAGAAAGATTA
GACATTGGTATCTACTACTGCAATTTGTTTTCTTAGTTTTGAGTAATCAT
TTCTGGAATATAAAGTCTTATAGTTTATATAGCTCTGTTTCATATTTAGA
ACCTAGGTTTTCTATTATTGTAAGGTTTATTTTTAAAATTATTTTCCATT
TTTAATATTGTCATAGATTTTATTGTTTTTGATGGTAAAATTTTTAGATA
AAATTAGTTAAAGTTGTGAGACCCTAAGAAAACCCTGTGGTTTTAGAGTG
GCCATGATAGCTCTATAAAAGTTTGGTGAGATGAATAAGATCGAGACTGT
GTGAAGATCAAGACTGTATGTTTGACTAGCTATATTAATATCGCTCTATG
GGTTGCTTTCTGTTGTTGTTGATATCGNCTTTGTTGGTGTTCTTGTTTCA
TTTGGAAGTCCCTAGGAATAAATGTTAAAGCAAATGTTTTACTTTAAAAG
GCTTGTTTTCAAAAAAGGAATTCTTTTATTTTTTTTTTATTTTTTAGGAA
TTATTCTCTTTTCTTTTTCCAGGGGTCCCCCAAGGCGCCCCCAGTGTCTT
CCTTTTTTCCCCCTTCTATCTTATTTATTTTTTGGTTTGGGTTTTCCTTC
TTCTGGGGTATGTACGCTTTCCCTTTATATGTCCCTTTTTCTTTTTTCGT
GCCTTGTTTCTTTTTCCGTTTTTTTTTTTTGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_a20.g1 MSMg01no357_a20.g1 CHROMAT_FILE:
MSMg01no357_a20.g1 PHD_FILE: MSMg01no357_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:57 2005
         (395 letters)



>mm_chr10_101096587_101097381
          Length = 795

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaggtaatttgttaaaagaaagattagacattggtatctactactgcaatttgtttt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcttaggtaatttgttaaaataaagattagacattggtatctactactgcaatttgtttt 536

                                                                       
Query: 61  cttagttttgagtaatcatttctggaatataaagtcttatagtttatatagctctgtttc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 535 cttagttttgagtaatcatttctggaatataaagtcttattgtttatatagctctgtttc 476

                                                                       
Query: 121 atatttagaacctaggttttctattattgtaaggtttatttttaaaattattttccattt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atatttagaatctaggttttctattattgtaaggtttatttttaaaattattttccattt 416

                                                                       
Query: 181 ttaatattgtcatagattttattgtttttgatggtaaaatttttagataaaattagttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttaatattgtcatagattttattgtttttgatggtaaaatttttagataaaattagttaa 356

                                                                       
Query: 241 agttgtgagaccctaagaaaaccctgtggttttagagtggccatgatagctctataaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agttgtgagaccctaagaaaaccctgtggttttagagtggccatgatagctctataaaag 296

                                                                       
Query: 301 tttggtgagatgaataagatcgagactgtgtgaagatcaagactgtatgtttgactagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tttggtgagatgaataagatcgagactgtgtgaagatcaagactgtatgtttgactagct 236

                                              
Query: 361 atattaatatcgctctatgggttgctttctgttgt 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 atattaatatcgctctatgggttgctttctgttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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