BAC Information

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BAC

Clone NameMSMg01-358B05
Chromosome10 (Build37)
Map Location 101,921,493 - 101,921,879
singlet/doubletsinglet
Overlap genenone
Upstream geneMgat4c
Downstream geneLOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358B05.T7 (MSMg01no358_b05.b1)MSMg01-358B05.TJ (MSMg01no358_b05.g1)
ACCAG467819AG467820
length776754
length of high quality
(start - end)
209 (32 - 240)388 (65 - 452)
definitionCHROMAT_FILE: MSMg01no358_b05.b1 PHD_FILE: MSMg01no358_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:15 2005CHROMAT_FILE: MSMg01no358_b05.g1 PHD_FILE: MSMg01no358_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTATACGACTCCTATAGTTAGAGGATCCGCGGAATTCTCACCTG
AGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTGGAGAAAGAGGAACACTNNCCTCCATTGTTGGNTGGGNATNTGNC
ANAAGNNCTTGGTTAACAAACCCCACCCTTCTTGGGGGAAAAATTCCAGT
TCCTTGGGGCGGGGTTTCCCCTCCAAGAAAAAAATTGGGGAACCATAAAG
TCCCCTTACCCCGGGAAAGGGATTCCCCAGGGGAAAAAAAACCCCTCCCC
CCCCCCGGGGCATAATATCCCCGAAAAAAATGGGCCCCCCCCNNTNNNNN
TTNTTTTTTGTTGGCGTGCGGTTCACACATATTTCTCACCTCCCATATTA
CAAACTTGGAATGAGCAAGATTTTTTTCCCTGCTTTTTTTTTCTCCTATT
TTTTTTTCAACTTTAATTTTCCTCTCCCCTTTGCTTCAATTTTTTCCCAT
TTTTAAATTTATTTCCACCCCCTTCTTTTCTCTCCCCTTTACTTTTATCT
ACCGCTCTTTTTCTCCCACCTCTCATCTCCTCTTATTTTTTCCCCCACTA
TTTCATTTTAATTATTCTATTAATTTATCCCTATTTCCTCCTTATTTTCC
CCCCCTCTCTTTTCTTTTCACTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGGTAGAATGTTGGAGGGAGGAGAAGGAGACAGTA
AATAAGATAAATACAGTAGACATGTATGAAAATTTAAAAATAGATTTATT
TAAAATCATAATAATGGCACCTTCTCCAAAGTCCCTTGAATCAGTTTGTG
TCAAGGTTTAGAAAGTAGGCAATATGAGATGTCTGCTAATGCCTGCTAGC
TCACCTACCTCTATTCAAGATAGAAATTTAGAGTAGAAAATTAAGAGCCA
ACCATACCTAATGAATAGTCATAGGCCATGAAAGCTTGGAATAAACTAGA
CTCAAAATACAGAGATAAATCCATGTCATTAAAAAATACACAAAAATAAG
TGGCAGGTGACATATAAGGTTATATCCTGCAGATTACACAGTTACTGAGG
TAAGGAGGGAAGAGATCTAGGCCCAAGGATATAAAAACTGTTCAATATAC
TACTGTGACACATTGTCGTTTTTATTTCTCTTTCAGCAACGCCAAATTTC
ACACATAAACAATGTTTCTTTTGGCTACCCACATTCTCCGGTTTCTTGCT
ATTAAAAGCTCAATACTTCATTTTTTTTTATGTTTATAATCTTTAAGAAA
TTTTTGTGCACCTCCCTTTATTTTTTTACCTCATTATACCCTATTTCTTT
ATATTGGGTTTTATTTGCCTTTTTTCTCCCCGTTCTTCGGGACATTTATA
AATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_b05.g1 MSMg01no358_b05.g1 CHROMAT_FILE:
MSMg01no358_b05.g1 PHD_FILE: MSMg01no358_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:15 2005
         (388 letters)



>mm_chr10_101921292_101922079
          Length = 788

 Score =  667 bits (345), Expect = 0.0
 Identities = 378/389 (97%), Gaps = 3/389 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtagaatgttggagggaggagaaggagacagtaaataagataaatacagtagacatg 60
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 202 atggtag-atgttggagggaggagaaggagacagtaaataaggtaaatacagtagacatg 260

                                                                       
Query: 61  tatgaaaa-tttaaaaatagatttatttaaaatcataataatggcaccttctccaaagtc 119
           |||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgaaaattt-aaaaatcgatttaattaaaatcataataatggcaccttctccaaagtc 319

                                                                       
Query: 120 ccttgaatcagtttgtgtcaaggtttagaaagtaggcaatatgagatgtctgctaatgcc 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 ccttgaatcagtttgtgtcaaggttcagaaagtaggcaatatgagatgtctgctaatgcc 379

                                                                       
Query: 180 tgctagctcacctacctctattcaagatagaaatttagagtagaaaattaagagccaacc 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 tgctagctcacctacctctattcaagatagaaatttagaatagaaaattaagagccaacc 439

                                                                       
Query: 240 atacctaatgaatagtcataggccatgaaagcttggaataaactagactcaaaatacaga 299
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atacctaatgaatagtcctgggccatgaaagcttggaataaactagactcaaaatacaga 499

                                                                       
Query: 300 gataaatccatgtcattaaaaaatacacaaaaataagtggcaggtgacatataaggttat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gataaatccatgtcattaaaaaatacacaaaaataagtggcaggtgacatataaggttat 559

                                        
Query: 360 atcctgcagattacacagttactgaggta 388
           | |||||||||||||||||||||||||||
Sbjct: 560 accctgcagattacacagttactgaggta 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)