Query= MSMg01no358_g04.b1 MSMg01no358_g04.b1 CHROMAT_FILE:
MSMg01no358_g04.b1 PHD_FILE: MSMg01no358_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:38 2005
(562 letters)
>mm_chr10_44236253_44237214
Length = 962
Score = 988 bits (511), Expect = 0.0
Identities = 552/577 (95%), Gaps = 21/577 (3%)
Strand = Plus / Minus
Query: 5 gaattctctggtcttcctataatttagaagataacgtatcaataacgataagaatggggg 64
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 891 gaattctctggtcttcctataatttagaagataacatatcaataacgataagaatggggg 832
Query: 65 gctggctgtgggacagacaatattcac---aatctaattgttttctttggggagttatta 121
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 831 gctggctgtgggacagacaatattcacaaaaa--taattgttttctttggggagttatta 774
Query: 122 atattactgctttccattatcagaaagaaacctgggtggtttggagggataccagcaatg 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 773 atattactgctttccattatcagaaagaaacctgggtggtttggggggataccagcaatg 714
Query: 182 ctaaccatgtgacccagtcatttaatgttggcattccaataacccaggctggcctagaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctaaccatgtgacccagtcatttaatgttggcattccaataacccaggctggcctagaac 654
Query: 242 tcatagcgaccatcctgcctcagcctctcatggtaatattaaacctgtgagccaatacat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tcatagcgaccatcctgcctcagcctctcatggtaatattaaacctgtgagccaatacat 594
Query: 302 gaatgtattaaaacatttccaagtgtcatcaacaggtgctctcaagggccagagagactg 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 593 gaatgtattaaaacatttccaagtgtcatcaacaggtgctctcaagggccagagagcctg 534
Query: 362 cttaagtagcaagggtacttacggtcaagttgatgact---------------agaccca 406
|||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 533 cttaagtagcaagggtacttaccgtcaagttgatgacttgagtttaattctggagaccca 474
Query: 407 cacagtgaaaggagagaaccactccc-gagctgctggctaacctccaccaatgtaccatg 465
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 473 cacagtgaaaggagagaaccactccccgagctgctggctaacctccaccaatgtaccatg 414
Query: 466 gctcatgcatgtgcacatgcgcacgtgcgtaaaaaacacaaacactataaatattttaag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gctcatgcatgtgcacatgcgcacgtgcgtaaaaaacacaaacactataaatattttaag 354
Query: 526 aggtatatccacttatgtttcatacattttgccattg 562
|||||||||||||||||||||||||||||||||||||
Sbjct: 353 aggtatatccacttatgtttcatacattttgccattg 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_g04.g1 MSMg01no358_g04.g1 CHROMAT_FILE:
MSMg01no358_g04.g1 PHD_FILE: MSMg01no358_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:38 2005
(513 letters)
>mm_chr10_44071729_44072638
Length = 910
Score = 922 bits (477), Expect = 0.0
Identities = 503/513 (98%), Gaps = 5/513 (0%)
Strand = Plus / Plus
Query: 1 tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagttctgagcctcattttttaatggggttatttgattttctgaagtccacctt 260
Query: 61 cttgagttctttatatatgttggatattagtcccctatctgatttagaataggtaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cttgagttctttatatatgttggatattagtcccctatctgatttaggataggtaaagat 320
Query: 121 cctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgtaactttaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgtaactttaat 380
Query: 181 agttgcttttaacccaagcagtagggtttggaattttgatttctttcactgacttgctgt 240
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct: 381 agttgcttttaacccaagcagtagggtt-ggaattttgatttatttcactgac--gctgt 437
Query: 241 atgagctcatctacttcctggttgccagtttctggctgttaggagtggctgagaaaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atgagctcatctacttcctggttgccagtttctggctgttaggagtggctgagaaaggtt 497
Query: 301 tcaagtgagggctggggggaagcagaaacacctttgcatctgtacagagctgtggccttt 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 tcaagtgagggctggggggaagcagaaacacctttgcctctgtacagagctgtggccttt 557
Query: 361 gagttcagttagcccaggctttgcatccctagacattccaatatctcctgggtattcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagttcagttagcccaggctttgcatccctagacattccaatatctcctgggtattcagt 617
Query: 421 tgggggatgagattaagaactgcagccttcacaagctttgccttctaatctggactctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 618 tgggggatgagattaagaactgcagccttcacaagctttgccttctaatctgg--tctct 675
Query: 481 ctctccctctctccctccctccctccctccctc 513
||||||||| |||||||||||||||||||||||
Sbjct: 676 ctctccctccctccctccctccctccctccctc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 910
Length adjustment: 10
Effective length of query: 503
Effective length of database: 900
Effective search space: 452700
Effective search space used: 452700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
