BAC Information

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BAC

Clone NameMSMg01-359P20
Chromosome10 (Build37)
Map Location 18,695,100 - 18,695,418
singlet/doubletsinglet
Overlap genenone
Upstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
Downstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359P20.T7 (MSMg01no359_p20.b1)MSMg01-359P20.TJ (MSMg01no359_p20.g1)
ACCAG469273AG469274
length781789
length of high quality
(start - end)
437 (46 - 482)343 (53 - 395)
definitionCHROMAT_FILE: MSMg01no359_p20.b1 PHD_FILE: MSMg01no359_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:37 2005CHROMAT_FILE: MSMg01no359_p20.g1 PHD_FILE: MSMg01no359_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATCGAGAGGATCCGCGGAATTCCATCCCCTAAATGAGAAT
CACAGAAAATAGTCAAGATCATGTCAAAAGTCCTGGCTCGGGACGGCATA
GGCCCCTGGAGAAAACAGACTAATGTAGGGAGAATCTCTTGTGCATTGTA
TGGAAGCATCACCTGTCAATAAAAAGCTGATGGTCCAATGAGGTGAGGCA
GGAAATATAAAGTGTGTGTTCTGACAGGGAGAGAAGAACTCTGGGATTAA
GTCAAGCATAGGGAGAGGTGCTCCCTGAACTCTGAGGACATGGATGCATG
AAACTGAGAAGAGGCAACCAACCATATGATACTCATAGAATAAATAGATT
AATTAACTTATGAGTTAGTTGGGGAACAACCCTAAGTTTATGGCTTGACA
TTTATTCACATATAATTAAGTATTAGAGTTGTTATTTCATGGGCTGGCTG
CAGGTGGATATGTCAGTTACTAATGATGACCAACACGGGGCTCTTATAAT
CCAAGCTTATAACCTGATAAAAAATCCTGGTTAGAAGGAAGGGGACAAAA
CCACTTCCCAGATCAATTTTCTAATTAGGCTGTAGGATATTTCACCATCC
TCCTTGGACAGAGTATAATGTTCCTCATTGAAAGCATTTCGGAAAACACC
CCCCATAACTTGTTTTTTTTTCCCCCCACACTTTTTACATCTCTTTTATT
CTTTAGTTCCTTCCCTAAACTCACTTGTTTCTCCCACCTTTTTTTTCCGC
AACTTTATTCGTTGTTCCATTTTCTCCCCTG
GGCCGCCTGTTTTCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXATGGCCAATCTAGACAACGGCCAATTGCTTAACTAATTAGTTAATATT
AAAATAATCAAAAAACCTGGACATTTCACCAAAGATCAAAAAGAAGGCAC
ATGGGTTTATGGAAAATGTTCAGATCTGGGACTAGTAAGTGGCTCAGGGT
TAGGTGTTACTGAAGCATTTTAAAGGACCTCCCCCCACCCCCAACCAAGT
AAGCCCTCAAGCTGTGTTAGAACAGTGTCCCCAAACTGAAAATGTAGAAT
GTTTACCATTAGGTACCATCCTCTGGGCTTTTTCATTTCATGGTTTGGGC
CTTGGGGTCACAATAAGCTATGGTTATACAATAATTTGGCCCCCCCCCTC
TTCTGACGACCGNAAGCTCATTCAGTGAGTAAAGGTACTTGCTGCCATGC
CTGATCACCTCAGTTTGATCCTGTTTCTGTCTGACCTCTACCCCTGTGTG
ATGGTTTATAATGCCTTGCCCATCGAGTGTCACTAACACGTGCGATCCCG
TTCCTCATATCGTGTTAATTTTTTCCCTCCCCCTTTTTTATTCTTTTCCC
TTTTCTCCCCATCTTTCCCTTTATTTAAATTCCCTCTTTTTCCCCCTCTT
TTATTACTTTCCTTTACACTTCTCTCCCTTTTCATTTTTTTCTCTCTTTA
TCCCTCTCTCCCCTTCTTTTTTACTTTTTTCTTTCCCCTTCCCTCTTTTC
CCCTTACTTCCTCTCCCCTTCTTTATCTTCCCTCACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_p20.g1 MSMg01no359_p20.g1 CHROMAT_FILE:
MSMg01no359_p20.g1 PHD_FILE: MSMg01no359_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:37 2005
         (343 letters)



>mm_chr10_18694882_18695624
          Length = 743

 Score =  532 bits (275), Expect = e-155
 Identities = 308/319 (96%)
 Strand = Plus / Minus

                                                                       
Query: 19  ggccaattgcttaactaattagttaatattaaaataatcaaaaaacctggacatttcacc 78
           |||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||
Sbjct: 537 ggccaattgcttaactaattagttaaaattaaattaataaaaaaacctagacatttcacc 478

                                                                       
Query: 79  aaagatcaaaaagaaggcacatgggtttatggaaaatgttcagatctgggactagtaagt 138
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaagatcagaaagaaggcacatgggtttatggaaaatgttcagatctgggactagtaagt 418

                                                                       
Query: 139 ggctcagggttaggtgttactgaagcattttaaaggacctccccccacccccaaccaagt 198
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 417 ggctcagggttaggtgttactgaagcattttaaaggacctctcccaacccccaaccaagt 358

                                                                       
Query: 199 aagccctcaagctgtgttagaacagtgtccccaaactgaaaatgtagaatgtttaccatt 258
           ||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||||||
Sbjct: 357 aagccctcatgctgtgttagaacagtgtccccaaactgaaaatgtagaaggcataccatt 298

                                                                       
Query: 259 aggtaccatcctctgggctttttcatttcatggtttgggccttggggtcacaataagcta 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aggtaccatcctctgggctttttcatttcatggtttgggccttggggtcacaataagcta 238

                              
Query: 319 tggttatacaataatttgg 337
           |||||||||||||||||||
Sbjct: 237 tggttatacaataatttgg 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)